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  • Last Published: 2014-10-17
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  • Version: 1.3.2

Clirr Results

The following document contains the results of Clirr.

  • Current Version: 1.3.2
  • Comparison Version: 1.3.0

Summary

Severity Number
 Error 110
 Warning 0

(The results have been filtered to omit less severe results)

Details

Severity Message Class Method / Field
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.alignment.CenterStarAlignment public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.alignment.PeakCliqueAlignment public boolean canEqual(java.lang.Object)
In method 'public java.util.List checkUserSuppliedAnchors(cross.datastructures.fragments.IFileFragment)' the number of arguments has changed maltcms.commands.fragments.alignment.PeakCliqueAlignment public java.util.List checkUserSuppliedAnchors(cross.datastructures.fragments.IFileFragment)
Method 'public boolean isBidiBestHitForAll(java.util.List, int)' has been removed maltcms.commands.fragments.alignment.PeakCliqueAlignment public boolean isBidiBestHitForAll(java.util.List, int)
Method 'public boolean isBidiBestHitForK(java.util.List, int, int)' has been removed maltcms.commands.fragments.alignment.PeakCliqueAlignment public boolean isBidiBestHitForK(java.util.List, int, int)
Method 'public boolean isFirstBidiBestHitForRest(java.util.List, int)' has been removed maltcms.commands.fragments.alignment.PeakCliqueAlignment public boolean isFirstBidiBestHitForRest(java.util.List, int)
In method 'public void saveSimilarityMatrix(cross.datastructures.tuple.TupleND, java.util.HashMap)' the number of arguments has changed maltcms.commands.fragments.alignment.PeakCliqueAlignment public void saveSimilarityMatrix(cross.datastructures.tuple.TupleND, java.util.HashMap)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.alignment.ProgressiveTreeAlignment public boolean canEqual(java.lang.Object)
In method 'public maltcms.commands.fragments.alignment.peakCliqueAlignment.BBHPeakEdgeSet findBiDiBestHits(java.util.List, java.util.List)' the number of arguments has changed maltcms.commands.fragments.alignment.peakCliqueAlignment.BBHFinder public maltcms.commands.fragments.alignment.peakCliqueAlignment.BBHPeakEdgeSet findBiDiBestHits(java.util.List, java.util.List)
Return type of method 'public maltcms.commands.fragments.alignment.peakCliqueAlignment.BBHPeakEdgeSet findBiDiBestHits(java.util.List, java.util.List)' has been changed to maltcms.commands.fragments.alignment.peakCliqueAlignment.BBHPeakList maltcms.commands.fragments.alignment.peakCliqueAlignment.BBHFinder public maltcms.commands.fragments.alignment.peakCliqueAlignment.BBHPeakEdgeSet findBiDiBestHits(java.util.List, java.util.List)
Class maltcms.commands.fragments.alignment.peakCliqueAlignment.BBHPeakEdgeSet removed maltcms.commands.fragments.alignment.peakCliqueAlignment.BBHPeakEdgeSet
In method 'public java.util.List create(cross.datastructures.tuple.TupleND, java.util.Map)' the number of arguments has changed maltcms.commands.fragments.alignment.peakCliqueAlignment.IWorkerFactory public java.util.List create(cross.datastructures.tuple.TupleND, java.util.Map)
Method 'public maltcms.math.functions.IScalarArraySimilarity getSimilarityFunction()' has been added to an interface maltcms.commands.fragments.alignment.peakCliqueAlignment.IWorkerFactory public maltcms.math.functions.IScalarArraySimilarity getSimilarityFunction()
Method 'public boolean isAssumeSymmetricSimilarity()' has been added to an interface maltcms.commands.fragments.alignment.peakCliqueAlignment.IWorkerFactory public boolean isAssumeSymmetricSimilarity()
Method 'public boolean isSavePeakSimilarities()' has been added to an interface maltcms.commands.fragments.alignment.peakCliqueAlignment.IWorkerFactory public boolean isSavePeakSimilarities()
Method 'public void setAssumeSymmetricSimilarity(boolean)' has been added to an interface maltcms.commands.fragments.alignment.peakCliqueAlignment.IWorkerFactory public void setAssumeSymmetricSimilarity(boolean)
Method 'public void setSavePeakSimilarities(boolean)' has been added to an interface maltcms.commands.fragments.alignment.peakCliqueAlignment.IWorkerFactory public void setSavePeakSimilarities(boolean)
Method 'public void setSimilarityFunction(maltcms.math.functions.IScalarArraySimilarity)' has been added to an interface maltcms.commands.fragments.alignment.peakCliqueAlignment.IWorkerFactory public void setSimilarityFunction(maltcms.math.functions.IScalarArraySimilarity)
Added final modifier to class maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker
In method 'public PairwiseSimilarityWorker()' the number of arguments has changed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker public PairwiseSimilarityWorker()
Return type of method 'public maltcms.commands.fragments.alignment.peakCliqueAlignment.BBHPeakEdgeSet call()' has been changed to maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityResult maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker public maltcms.commands.fragments.alignment.peakCliqueAlignment.BBHPeakEdgeSet call()
Method 'public boolean canEqual(java.lang.Object)' has been removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker public boolean canEqual(java.lang.Object)
Method 'public void setLhsPeaks(java.util.List)' has been removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker public void setLhsPeaks(java.util.List)
Method 'public void setMaxRTDifference(double)' has been removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker public void setMaxRTDifference(double)
Method 'public void setName(java.lang.String)' has been removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker public void setName(java.lang.String)
Method 'public void setRhsPeaks(java.util.List)' has been removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker public void setRhsPeaks(java.util.List)
Method 'public void setSimilarityFunction(maltcms.math.functions.IScalarArraySimilarity)' has been removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker public void setSimilarityFunction(maltcms.math.functions.IScalarArraySimilarity)
Added final modifier to class maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker2D
In method 'public PairwiseSimilarityWorker2D()' the number of arguments has changed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker2D public PairwiseSimilarityWorker2D()
Return type of method 'public maltcms.commands.fragments.alignment.peakCliqueAlignment.BBHPeakEdgeSet call()' has been changed to maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityResult maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker2D public maltcms.commands.fragments.alignment.peakCliqueAlignment.BBHPeakEdgeSet call()
Method 'public boolean canEqual(java.lang.Object)' has been removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker2D public boolean canEqual(java.lang.Object)
Method 'public void setLhsPeaks(java.util.List)' has been removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker2D public void setLhsPeaks(java.util.List)
Method 'public void setMaxRTDifferenceRt1(double)' has been removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker2D public void setMaxRTDifferenceRt1(double)
Method 'public void setMaxRTDifferenceRt2(double)' has been removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker2D public void setMaxRTDifferenceRt2(double)
Method 'public void setName(java.lang.String)' has been removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker2D public void setName(java.lang.String)
Method 'public void setRhsPeaks(java.util.List)' has been removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker2D public void setRhsPeaks(java.util.List)
Method 'public void setSimilarityFunction(maltcms.math.functions.IScalarArraySimilarity)' has been removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PairwiseSimilarityWorker2D public void setSimilarityFunction(maltcms.math.functions.IScalarArraySimilarity)
Removed maltcms.datastructures.peak.IBipacePeak from the set of implemented interfaces maltcms.commands.fragments.alignment.peakCliqueAlignment.Peak2D
Removed maltcms.datastructures.peak.PeakNG from the list of superclasses maltcms.commands.fragments.alignment.peakCliqueAlignment.Peak2D
Parameter 5 of 'public Peak2D(int, ucar.ma2.Array, double, java.lang.String, boolean)' has changed its type to int maltcms.commands.fragments.alignment.peakCliqueAlignment.Peak2D public Peak2D(int, ucar.ma2.Array, double, java.lang.String, boolean)
Class maltcms.commands.fragments.alignment.peakCliqueAlignment.PeakSimilarities removed maltcms.commands.fragments.alignment.peakCliqueAlignment.PeakSimilarities
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.alignment.peakCliqueAlignment.PeakSimilarityVisualizer public boolean canEqual(java.lang.Object)
In method 'public void visualizePeakSimilarities(java.util.Map, int, java.lang.String)' the number of arguments has changed maltcms.commands.fragments.alignment.peakCliqueAlignment.PeakSimilarityVisualizer public void visualizePeakSimilarities(java.util.Map, int, java.lang.String)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.alignment.peakCliqueAlignment.Worker2DFactory public boolean canEqual(java.lang.Object)
In method 'public java.util.List create(cross.datastructures.tuple.TupleND, java.util.Map)' the number of arguments has changed maltcms.commands.fragments.alignment.peakCliqueAlignment.Worker2DFactory public java.util.List create(cross.datastructures.tuple.TupleND, java.util.Map)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.alignment.peakCliqueAlignment.WorkerFactory public boolean canEqual(java.lang.Object)
In method 'public java.util.List create(cross.datastructures.tuple.TupleND, java.util.Map)' the number of arguments has changed maltcms.commands.fragments.alignment.peakCliqueAlignment.WorkerFactory public java.util.List create(cross.datastructures.tuple.TupleND, java.util.Map)
In method 'public maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.IPeakFactoryImpl createInstance(cross.datastructures.fragments.IFileFragment, boolean, cross.datastructures.tuple.Tuple2D, int, double, boolean, boolean)' the number of arguments has changed maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.IPeakFactory public maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.IPeakFactoryImpl createInstance(cross.datastructures.fragments.IFileFragment, boolean, cross.datastructures.tuple.Tuple2D, int, double, boolean, boolean)
Return type of method 'public maltcms.datastructures.peak.IBipacePeak create(int, int)' has been changed to maltcms.commands.fragments.alignment.peakCliqueAlignment.IBipacePeak maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.IPeakFactoryImpl public maltcms.datastructures.peak.IBipacePeak create(int, int)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.Peak1DFactory public boolean canEqual(java.lang.Object)
In method 'public maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.IPeakFactoryImpl createInstance(cross.datastructures.fragments.IFileFragment, boolean, cross.datastructures.tuple.Tuple2D, int, double, boolean, boolean)' the number of arguments has changed maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.Peak1DFactory public maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.IPeakFactoryImpl createInstance(cross.datastructures.fragments.IFileFragment, boolean, cross.datastructures.tuple.Tuple2D, int, double, boolean, boolean)
In method 'public maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.IPeakFactoryImpl createInstance(cross.datastructures.fragments.IFileFragment, boolean, cross.datastructures.tuple.Tuple2D, int, double, boolean, boolean)' the number of arguments has changed maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.Peak1DMSFactory public maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.IPeakFactoryImpl createInstance(cross.datastructures.fragments.IFileFragment, boolean, cross.datastructures.tuple.Tuple2D, int, double, boolean, boolean)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.Peak2DMSFactory public boolean canEqual(java.lang.Object)
In method 'public maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.IPeakFactoryImpl createInstance(cross.datastructures.fragments.IFileFragment, boolean, cross.datastructures.tuple.Tuple2D, int, double, boolean, boolean)' the number of arguments has changed maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.Peak2DMSFactory public maltcms.commands.fragments.alignment.peakCliqueAlignment.peakFactory.IPeakFactoryImpl createInstance(cross.datastructures.fragments.IFileFragment, boolean, cross.datastructures.tuple.Tuple2D, int, double, boolean, boolean)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.cluster.ClusteringAlgorithm public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.cluster.PairwiseDistanceCalculator public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.cluster.pairwiseDistanceCalculator.MziDtwWorkerFactory public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.cluster.pairwiseDistanceCalculator.PairwiseDistanceResult public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.cluster.pairwiseDistanceCalculator.PairwiseDistanceWorker public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.cluster.pairwiseDistanceCalculator.TicDtwWorkerFactory public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.io.ANDIChromImporter public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.io.ANDIMSExporter public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.io.CSVAnchorReader public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.io.DataFileVariablePrinter public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.io.MSPExporter public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.io.ObiWarplmataExporter public boolean canEqual(java.lang.Object)
Class maltcms.commands.fragments.io.PeakAreaTableExporter removed maltcms.commands.fragments.io.PeakAreaTableExporter
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.io.TICPeakListImporter public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.io.VariableDataExporter public boolean canEqual(java.lang.Object)
Return type of method 'public java.util.ArrayList getVarNames()' has been changed to java.util.List maltcms.commands.fragments.io.VariableDataExporter public java.util.ArrayList getVarNames()
Parameter 1 of 'public void setVarNames(java.util.ArrayList)' has changed its type to java.util.List maltcms.commands.fragments.io.VariableDataExporter public void setVarNames(java.util.ArrayList)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.peakfinding.CwtEicPeakFinder public boolean canEqual(java.lang.Object)
Method 'public java.lang.String getBinnedIntensityValues()' has been removed maltcms.commands.fragments.peakfinding.CwtEicPeakFinder public java.lang.String getBinnedIntensityValues()
Method 'public java.lang.String getBinnedMassValues()' has been removed maltcms.commands.fragments.peakfinding.CwtEicPeakFinder public java.lang.String getBinnedMassValues()
Method 'public java.lang.String getBinnedScanIndex()' has been removed maltcms.commands.fragments.peakfinding.CwtEicPeakFinder public java.lang.String getBinnedScanIndex()
Method 'public void setBinnedIntensityValues(java.lang.String)' has been removed maltcms.commands.fragments.peakfinding.CwtEicPeakFinder public void setBinnedIntensityValues(java.lang.String)
Method 'public void setBinnedMassValues(java.lang.String)' has been removed maltcms.commands.fragments.peakfinding.CwtEicPeakFinder public void setBinnedMassValues(java.lang.String)
Method 'public void setBinnedScanIndex(java.lang.String)' has been removed maltcms.commands.fragments.peakfinding.CwtEicPeakFinder public void setBinnedScanIndex(java.lang.String)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.peakfinding.CwtTicPeakFinder public boolean canEqual(java.lang.Object)
Method 'public boolean isIntegrateRawTic()' has been removed maltcms.commands.fragments.peakfinding.CwtTicPeakFinder public boolean isIntegrateRawTic()
Method 'public void setIntegrateRawTic(boolean)' has been removed maltcms.commands.fragments.peakfinding.CwtTicPeakFinder public void setIntegrateRawTic(boolean)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.peakfinding.EICPeakFinder public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.peakfinding.PeakAreaNormalizer public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.peakfinding.TICPeakFinder public boolean canEqual(java.lang.Object)
Method 'public java.util.List findPeakAreas(cross.datastructures.fragments.IFileFragment, java.util.List, java.lang.String, ucar.ma2.Array, ucar.ma2.Array, double[])' has been removed maltcms.commands.fragments.peakfinding.TICPeakFinder public java.util.List findPeakAreas(cross.datastructures.fragments.IFileFragment, java.util.List, java.lang.String, ucar.ma2.Array, ucar.ma2.Array, double[])
Method 'public maltcms.commands.fragments.peakfinding.ticPeakFinder.PeakPositionsResultSet findPeakPositions(ucar.ma2.Array, ucar.ma2.Array)' has been removed maltcms.commands.fragments.peakfinding.TICPeakFinder public maltcms.commands.fragments.peakfinding.ticPeakFinder.PeakPositionsResultSet findPeakPositions(ucar.ma2.Array, ucar.ma2.Array)
Method 'public void savePeakAnnotations(java.util.List, cross.datastructures.fragments.IFileFragment)' has been removed maltcms.commands.fragments.peakfinding.TICPeakFinder public void savePeakAnnotations(java.util.List, cross.datastructures.fragments.IFileFragment)
Method 'public void visualize(cross.datastructures.fragments.IFileFragment, ucar.ma2.Array, ucar.ma2.Array, ucar.ma2.Array, double[], ucar.ma2.ArrayInt$D1, double, org.apache.commons.math.analysis.polynomials.PolynomialSplineFunction)' has been removed maltcms.commands.fragments.peakfinding.TICPeakFinder public void visualize(cross.datastructures.fragments.IFileFragment, ucar.ma2.Array, ucar.ma2.Array, ucar.ma2.Array, double[], ucar.ma2.ArrayInt$D1, double, org.apache.commons.math.analysis.polynomials.PolynomialSplineFunction)
Class maltcms.commands.fragments.peakfinding.cwtEicPeakFinder.CwtEicPeakFinderCallable removed maltcms.commands.fragments.peakfinding.cwtEicPeakFinder.CwtEicPeakFinderCallable
Class maltcms.commands.fragments.peakfinding.cwtEicPeakFinder.CwtTicPeakFinderCallable removed maltcms.commands.fragments.peakfinding.cwtEicPeakFinder.CwtTicPeakFinderCallable
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.peakfinding.ticPeakFinder.LoessMinimaBaselineEstimator public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.peakfinding.ticPeakFinder.QuantileSnrPeakFinder public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.preprocessing.DefaultVarLoader public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.preprocessing.DenseArrayProducer public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.preprocessing.MassFilter public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.preprocessing.ScanExtractor public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.preprocessing.defaultVarLoader.DefaultVarLoaderWorker public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.preprocessing.denseArrayProducer.DenseArrayProducerWorker public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.preprocessing.denseArrayProducer.MinMaxMassFinderWorker public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.visualization.Array1DVisualizer public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.visualization.ChromatogramVisualizer public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.visualization.EICHeatmapCoplot public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.visualization.MZIDistributionVisualizer public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.visualization.PairwiseAlignmentMatrixVisualizer public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.visualization.PairwiseAlignmentVisualizer public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.visualization.ScoreDistributionVisualizer public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.visualization.TICHeatmapCoplot public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.warp.ChromatogramWarp2 public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected maltcms.commands.fragments.warp.PathWarp public boolean canEqual(java.lang.Object)
Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected net.sf.maltcms.tutorials.MyFragmentCommand public boolean canEqual(java.lang.Object)

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