Clirr Results
The following document contains the results of Clirr.
- Current Version: 1.3.2
- Comparison Version: 1.3.0
Summary
| Severity | Number |
|---|---|
| Error | 33 |
| Warning | 0 |
(The results have been filtered to omit less severe results)
Details
| Severity | Message | Class | Method / Field |
|---|---|---|---|
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.preprocessing.Data1Dto2DConverter | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.preprocessing.Data2DNormalizer | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.preprocessing.Default2DVarLoader | public boolean canEqual(java.lang.Object) | |
| Method 'public double getScanAcquisitionTimeOffset()' has been removed | maltcms.commands.fragments2d.preprocessing.Default2DVarLoader | public double getScanAcquisitionTimeOffset() | |
| Method 'public void setScanAcquisitionTimeOffset(double)' has been removed | maltcms.commands.fragments2d.preprocessing.Default2DVarLoader | public void setScanAcquisitionTimeOffset(double) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.preprocessing.GCGCToGCMSConverter | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.preprocessing.MeanVarProducer | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.preprocessing.MeanVarVis | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.preprocessing.ModulationExtractor | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.preprocessing.ModulationTimeEstimator | public boolean canEqual(java.lang.Object) | |
| Method 'public java.util.concurrent.ExecutorService getEs()' has been removed | maltcms.commands.fragments2d.preprocessing.ModulationTimeEstimator | public java.util.concurrent.ExecutorService getEs() | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.preprocessing.default2dVarLoader.ModulationTimeEstimatorTask | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.testing.AlignmentPath2D | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.testing.Visualization2D | public boolean canEqual(java.lang.Object) | |
| Method 'public double[] getQuantilValue(cross.datastructures.fragments.IFileFragment, ucar.ma2.Array, double[], boolean, cross.commands.fragments.AFragmentCommand)' has been removed | maltcms.commands.fragments2d.tools.ArrayTools | public double[] getQuantilValue(cross.datastructures.fragments.IFileFragment, ucar.ma2.Array, double[], boolean, cross.commands.fragments.AFragmentCommand) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.visualization.Chromatogram2DVisualizer | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.visualization.DeltaMasses | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.visualization.GradientVisualizer | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.visualization.MassSpectrumVisualization | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.warp.CreateHorizontalTicVector | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.warp.DTW2DPeakAreaVisualizer | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.warp.DTW2DTicVisualizer | public boolean canEqual(java.lang.Object) | |
| Method 'public java.lang.String getVisualizerClass()' has been removed | maltcms.commands.fragments2d.warp.DTW2DTicVisualizer | public java.lang.String getVisualizerClass() | |
| Method 'public void setVisualizerClass(java.lang.String)' has been removed | maltcms.commands.fragments2d.warp.DTW2DTicVisualizer | public void setVisualizerClass(java.lang.String) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.warp.ScanlineFilterTicWarp | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.warp.ScanlineHorizontalTicWarp | public boolean canEqual(java.lang.Object) | |
| Method 'public int getK()' has been removed | maltcms.commands.fragments2d.warp.ScanlineHorizontalTicWarp | public int getK() | |
| Method 'public void setK(int)' has been removed | maltcms.commands.fragments2d.warp.ScanlineHorizontalTicWarp | public void setK(int) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.warp.ScanlineMaxMSWarp | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.warp.ScanlineMeanMSWarp | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.warp.ScanlineTicWarp | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.warp.visualization.Default2DTWVisualizer | public boolean canEqual(java.lang.Object) | |
| Accessibility of method 'public boolean canEqual(java.lang.Object)' has been decreased from public to protected | maltcms.commands.fragments2d.warp.visualization.Ident2DTWVisualizer | public boolean canEqual(java.lang.Object) |