compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

Dependency Tree

• net.sf.maltcms:maltcms-io-mztab:jar:1.3.2

  Maltcms IO Provider mzTab
  Description: (Highly Experimental) Support for mzTab Creation and Export. URL: http://maltcms.sourceforge.net/maven/maltcms/1.3.2/maltcms-io-mztab Project License: L-GPL v3Eclipse Public License (EPL)

  • uk.ac.ebi.pride:jmztab:jar:2.1.5 (compile)

    jmztab
    Description: There is currently no description associated with this project. Project License: Apache 2

    • commons-cli:commons-cli:jar:1.2 (compile)

      Commons CLI
      Description: Commons CLI provides a simple API for presenting, processing and validating a command line interface. URL: http://commons.apache.org/cli/ Project License: The Apache Software License, Version 2.0

    • commons-dbcp:commons-dbcp:jar:1.4 (compile)

      Commons DBCP
      Description: Commons Database Connection Pooling URL: http://commons.apache.org/dbcp/ Project License: The Apache Software License, Version 2.0

      • commons-pool:commons-pool:jar:1.5.4 (compile)

        Commons Pool
        Description: Commons Object Pooling Library URL: http://commons.apache.org/pool/ Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.pride.jaxb:pride-jaxb:jar:1.0.7 (compile)

      PRIDE JAXB model
      Description: This is the JAXB based API for PRIDE 2 Project License: No license is defined for this project.

      • psidev.psi.tools:xxindex:jar:0.10 (compile)

        PSI :: Tools :: Xml XPath Indexer
        Description: There is currently no description associated with this project. Project License: The Apache Software License, Version 2.0

        • org.apache.commons:com.springsource.org.apache.commons.io:jar:1.4.0 (compile)

          com.springsource.org.apache.commons.io
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • cpdetector:cpdetector:jar:1.0.7 (compile)

          cpdetector
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • org.antlr:com.springsource.antlr:jar:2.7.7 (compile)

            com.springsource.antlr
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • jargs:jargs:jar:1.0 (compile)

            jargs
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • org.mozilla.intl:chardet:jar:1.0 (compile)

            chardet
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • org.apache.log4j:com.springsource.org.apache.log4j:jar:1.2.15 (compile)

          com.springsource.org.apache.log4j
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • uk.ac.ebi.pride.tools.converter:dao-api:jar:1.0.1-SNAPSHOT (compile)

      PRIDE Converter DAO API
      Description: The DAO interface for PRIDE Converter 2 Project License: No license is defined for this project.

      • uk.ac.ebi.pride.tools.converter:report-api:jar:1.0-SNAPSHOT (compile)

        PRIDE Converter Report Object Model
        Description: This is the report file object model for PRIDE Converter 2 Project License: No license is defined for this project.

        • javax.xml.bind:jaxb-api:jar:2.1 (compile)

          jaxb-api
          Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • javax.xml.stream:stax-api:jar:1.0-2 (compile)

            Streaming API for XML
            Description: StAX is a standard XML processing API that allows you to stream XML data from and to your application. Project License: GNU General Public LibraryCOMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0

          • javax.activation:activation:jar:1.1 (compile)

            JavaBeans Activation Framework (JAF)

            Description: JavaBeans Activation Framework (JAF) is a standard extension to the Java platform that lets you take advantage of standard services to: determine the type of an arbitrary piece of data; encapsulate access to it; discover the operations available on it; and instantiate the appropriate bean to perform the operation(s). URL: http://java.sun.com/products/javabeans/jaf/index.jsp Project License: Common Development and Distribution License (CDDL) v1.0

      • uk.ac.ebi.pride.tools.converter:converter-common:jar:1.1 (compile)

        PRIDE Converter Common Utilities
        Description: Common utilities for PRIDE Converter 2 Project License: No license is defined for this project.

    • uk.ac.ebi.jmzidml:jmzidentml:jar:1.1.6 (compile)

      mzIdentML Java core API
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • it.unimi.dsi:fastutil:jar:6.5.1 (compile)

        fastutil
        Description: fastutil extends the Java Collections Framework by providing type-specific maps, sets, lists and priority queues with a small memory footprint and fast access and insertion; provides also big (64-bit) arrays, sets and lists, and fast, practical I/O classes for binary and text files. URL: http://fasutil.dsi.unimi.it/ Project License: Apache License, Version 2.0

    • com.sun.xml.bind:jaxb-xjc:jar:2.1.7 (compile)

      jaxb-xjc
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • com.sun.xml.bind:jaxb-impl:jar:2.1.12 (compile)

        jaxb-impl
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • uk.ac.ebi.pride:ion-generator:jar:1.0-SNAPSHOT (compile)

      ion-generator
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • uk.ac.ebi.pride:pride-utilities:jar:0.1.17 (compile)

        pride-utilities
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • com.lowagie:itext:jar:4.2.0 (compile)

          iText-4.2.0
          Description: This is a build of the last MPL version of iText. URL: https://github.com/weiyeh/iText-4.2.0 Project License: GNU General Lesser Public License (LGPL) version 3.0Mozilla Public License Version 2.0

          • org.bouncycastle:bctsp-jdk14:jar:1.38 (compile)

            Bouncy Castle OpenPGP API
            Description: The Bouncy Castle Java API for handling the Time Stamp Protocol (TSP). This jar contains the TSP API for JDK 1.4. The APIs can be used in conjunction with a JCE/JCA provider such as the one provided with the Bouncy Castle Cryptography APIs. URL: http://www.bouncycastle.org/java.html Project License: Bouncy Castle Licence

            • org.bouncycastle:bcprov-jdk14:jar:1.38 (compile)

              Bouncy Castle Provider
              Description: The Bouncy Castle Crypto package is a Java implementation of cryptographic algorithms. This jar contains JCE provider and lightweight API for the Bouncy Castle Cryptography APIs for JDK 1.4. URL: http://www.bouncycastle.org/java.html Project License: Bouncy Castle Licence

            • org.bouncycastle:bcmail-jdk14:jar:1.38 (compile)

              Bouncy Castle CMS and S/MIME API

              Description: The Bouncy Castle Java CMS and S/MIME APIs for handling the CMS and S/MIME protocols. This jar contains CMS and S/MIME APIs for JDK 1.4. The APIs can be used in conjunction with a JCE/JCA provider such as the one provided with the Bouncy Castle Cryptography APIs. If the S/MIME API is used, the JavaMail API and the Java activation framework will also be needed. URL: http://www.bouncycastle.org/java.html Project License: Bouncy Castle Licence

          • dom4j:dom4j:jar:1.6.1 (compile)

            dom4j
            Description: dom4j: the flexible XML framework for Java URL: http://dom4j.org Project License: No license is defined for this project.

            • xml-apis:xml-apis:jar:1.0.b2 (compile)

              XML Commons External Components XML APIs

              Description: xml-commons provides an Apache-hosted set of DOM, SAX, and JAXP interfaces for use in other xml-based projects. Our hope is that we can standardize on both a common version and packaging scheme for these critical XML standards interfaces to make the lives of both our developers and users easier. The External Components portion of xml-commons contains interfaces that are defined by external standards organizations. For DOM, that's the W3C; for SAX it's David Megginson and sax.sourceforge.net; for JAXP it's Sun. URL: http://xml.apache.org/commons/#external Project License: The Apache Software License, Version 2.0

          • jfree:jfreechart:jar:1.0.12 (compile)

            jfreechart
            Description: JFreeChart is a class library, written in Java, for generating charts. Utilising the Java2D APIs, it currently supports bar charts, pie charts, line charts, XY-plots and time series plots. URL: http://www.jfree.org/jfreechart/ Project License: GNU Lesser General Public Licence

            • jfree:jcommon:jar:1.0.15 (compile)

              jcommon
              Description: JCommon is a free general purpose Java class library that is used in several projects at www.jfree.org, including JFreeChart and JFreeReport. URL: http://www.jfree.org/jcommon/ Project License: GNU Lesser General Public Licence

          • org.swinglabs:pdf-renderer:jar:1.0.5 (compile)

            PDF Renderer
            Description: PDF renderer implementation supporting the subset of PDF 1.4 specification. URL: http://www.swinglabs.org/ Project License: Lesser General Public License (LGPL)

        • batik:batik-dom:jar:1.6-1 (compile)

          Batik DOM
          Description: Batik DOM Project License: No license is defined for this project.

          • batik:batik-css:jar:1.6-1 (compile)

            Batik CSS
            Description: Batik CSS Project License: No license is defined for this project.

            • batik:batik-util:jar:1.6-1 (compile)

              Batik Utilities
              Description: Batik Utilities Project License: No license is defined for this project.

              • batik:batik-gui-util:jar:1.6-1 (compile)

                Batik GUI Utilities
                Description: Batik GUI Utilities Project License: No license is defined for this project.

                • batik:batik-ext:jar:1.6-1 (compile)

                  Batik Ext
                  Description: Batik Ext Project License: No license is defined for this project.

                  • xml-apis:xmlParserAPIs:jar:2.0.2 (compile)

                    xmlParserAPIs
                    Description: There is currently no description associated with this project. Project License: No license is defined for this project.

          • batik:batik-xml:jar:1.6-1 (compile)

            Batik XML
            Description: Batik XML Project License: No license is defined for this project.

          • xerces:xercesImpl:jar:2.5.0 (compile)

            xercesImpl
            Description: There is currently no description associated with this project. Project License: No license is defined for this project.

        • batik:batik-svggen:jar:1.6-1 (compile)

          Batik SVG Generator
          Description: Batik SVG Generator Project License: No license is defined for this project.

          • batik:batik-gvt:jar:1.6-1 (compile)

            Batik GVT
            Description: Batik GVT Project License: No license is defined for this project.

            • batik:batik-awt-util:jar:1.6-1 (compile)

              Batik AWT Utilities
              Description: Batik AWT Utilities Project License: No license is defined for this project.

          • batik:batik-svg-dom:jar:1.6-1 (compile)

            Batik SVG DOM
            Description: Batik SVG DOM Project License: No license is defined for this project.

            • batik:batik-parser:jar:1.6-1 (compile)

              Batik Parser
              Description: Batik Parser Project License: No license is defined for this project.

      • org.apache.commons:commons-math3:jar:3.2 (compile)

        Commons Math
        Description: The Math project is a library of lightweight, self-contained mathematics and statistics components addressing the most common practical problems not immediately available in the Java programming language or commons-lang. URL: http://commons.apache.org/proper/commons-math/ Project License: The Apache Software License, Version 2.0

    • uk.ac.ebi.pride:px-submission-core:jar:1.13-SNAPSHOT (compile)

      px-submission-core
      Description: Parent pom for all PRIDE related project Project License: Apache 2

      • uk.ac.ebi.pride.prider:prider-data-provider-api:jar:1.0 (compile)

        prider-data-provider-api
        Description: Parent pom for all PRIDE related project URL: http://www.ebi.ac.uk/pride Project License: No license is defined for this project.

      • ch.qos.logback:logback-core:jar:1.0.7 (compile)

        Logback Core Module
        Description: logback-core module URL: http://logback.qos.ch Project License: Eclipse Public License - v 1.0GNU Lesser General Public License

      • org.slf4j:jcl-over-slf4j:jar:1.6.4 (compile)

        JCL 1.1.1 implemented over SLF4J
        Description: JCL 1.1.1 implementation over SLF4J URL: http://www.slf4j.org Project License: MIT License

      • ch.qos.logback:logback-classic:jar:1.0.7 (compile)

        Logback Classic Module
        Description: logback-classic module URL: http://logback.qos.ch Project License: Eclipse Public License - v 1.0GNU Lesser General Public License

  • net.sf.maltcms:cross-main:jar:1.4.0 (compile)

    Cross Main
    Description: There is currently no description associated with this project. URL: http://maltcms.sourceforge.net/maven/cross/1.4.0/cross-main Project License: L-GPL v3Eclipse Public License (EPL)

    • net.sf.maltcms:cross-annotations:jar:1.4.0 (compile)

      Cross Annotations
      Description: There is currently no description associated with this project. URL: http://maltcms.sourceforge.net/maven/cross/1.4.0/cross-annotations Project License: L-GPL v3Eclipse Public License (EPL)

    • net.sf.maltcms:cross-event:jar:1.4.0 (compile)

      Cross Events
      Description: There is currently no description associated with this project. URL: http://maltcms.sourceforge.net/maven/cross/1.4.0/cross-event Project License: L-GPL v3Eclipse Public License (EPL)

    • net.sf.maltcms:cross-tools:jar:1.4.0 (compile)

      Cross Tools
      Description: There is currently no description associated with this project. URL: http://maltcms.sourceforge.net/maven/cross/1.4.0/cross-tools Project License: L-GPL v3Eclipse Public License (EPL)

    • net.sf.maltcms:cross-exception:jar:1.4.0 (compile)

      Cross Exceptions
      Description: There is currently no description associated with this project. URL: http://maltcms.sourceforge.net/maven/cross/1.4.0/cross-exception Project License: L-GPL v3Eclipse Public License (EPL)

    • commons-codec:commons-codec:jar:1.5 (compile)

      Commons Codec
      Description: The codec package contains simple encoder and decoders for various formats such as Base64 and Hexadecimal. In addition to these widely used encoders and decoders, the codec package also maintains a collection of phonetic encoding utilities. URL: http://commons.apache.org/codec/ Project License: The Apache Software License, Version 2.0

    • org.springframework:org.springframework.aop:jar:3.2.4.RELEASE (compile)

      org.springframework.aop
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • org.aopalliance:com.springsource.org.aopalliance:jar:1.0.0 (compile)

        com.springsource.org.aopalliance
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • org.springframework:org.springframework.beans:jar:3.2.4.RELEASE (compile)

      org.springframework.beans
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

      • org.apache.commons:com.springsource.org.apache.commons.logging:jar:1.1.1 (compile)

        com.springsource.org.apache.commons.logging
        Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • org.springframework:org.springframework.context:jar:3.2.4.RELEASE (compile)

      org.springframework.context
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • org.springframework:org.springframework.core:jar:3.2.4.RELEASE (compile)

      org.springframework.core
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • org.springframework:org.springframework.expression:jar:3.2.4.RELEASE (compile)

      org.springframework.expression
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • commons-io:commons-io:jar:2.4 (compile)

      Commons IO
      Description: The Commons IO library contains utility classes, stream implementations, file filters, file comparators, endian transformation classes, and much more. URL: http://commons.apache.org/io/ Project License: The Apache Software License, Version 2.0

    • net.sf.mpaxs:mpaxs-spi:jar:1.7.0 (compile)

      mpaxs-spi
      Description: There is currently no description associated with this project. URL: http://mpaxs.sf.net/maven/1.7.0/mpaxs-spi Project License: GNU Lesser General Public License (LGPL)Eclipse Public License (EPL)

      • net.sf.mpaxs:mpaxs-api:jar:1.7.0 (compile)

        mpaxs-api
        Description: There is currently no description associated with this project. URL: http://mpaxs.sf.net/maven/1.7.0/mpaxs-api Project License: GNU Lesser General Public License (LGPL)Eclipse Public License (EPL)

    • net.sf.mpaxs:mpaxs-server:jar:1.7.0 (compile)

      mpaxs-server
      Description: There is currently no description associated with this project. URL: http://mpaxs.sf.net/maven/1.7.0/mpaxs-server Project License: GNU Lesser General Public License (LGPL)Eclipse Public License (EPL)

      • org.swinglabs:swing-layout-osgi:jar:1.0.3 (compile)

        swing-layout-osgi
        Description: Artifactory auto generated POM Project License: No license is defined for this project.

      • net.sf.mpaxs:mpaxs-computeHost:jar:1.7.0 (compile)

        mpaxs-computeHost
        Description: There is currently no description associated with this project. URL: http://mpaxs.sf.net/maven/1.7.0/mpaxs-computeHost Project License: GNU Lesser General Public License (LGPL)Eclipse Public License (EPL)

        • net.sf.mpaxs:mpaxs-drmaa-spi:jar:1.7.0 (compile)

          mpaxs-drmaa-spi
          Description: There is currently no description associated with this project. URL: http://mpaxs.sf.net/maven/1.7.0/mpaxs-drmaa-spi Project License: GNU Lesser General Public License (LGPL)Eclipse Public License (EPL)

          • org.gff.drmaa:sun-drmaa-impl-osgi:jar:1.0.0 (compile)

            sun-drmaa-impl-osgi
            Description: Artifactory auto generated POM Project License: No license is defined for this project.

    • commons-configuration:commons-configuration:jar:1.9 (compile)

      Commons Configuration
      Description: Tools to assist in the reading of configuration/preferences files in various formats URL: http://commons.apache.org/configuration/ Project License: The Apache Software License, Version 2.0

      • commons-lang:commons-lang:jar:2.6 (compile)

        Commons Lang
        Description: Commons Lang, a package of Java utility classes for the classes that are in java.lang's hierarchy, or are considered to be so standard as to justify existence in java.lang. URL: http://commons.apache.org/lang/ Project License: The Apache Software License, Version 2.0

    • edu.ucar.unidata:netcdf-osgi:jar:4.2.35 (compile)

      netcdf-osgi
      Description: Artifactory auto generated POM Project License: No license is defined for this project.

    • org.jdom:com.springsource.org.jdom:jar:1.1.0 (compile)

      com.springsource.org.jdom
      Description: There is currently no description associated with this project. Project License: No license is defined for this project.

    • net.sf.maltcms:cross-math:jar:1.4.0 (compile)

      Cross Math
      Description: There is currently no description associated with this project. URL: http://maltcms.sourceforge.net/maven/cross/1.4.0/cross-math Project License: L-GPL v3Eclipse Public License (EPL)

    • net.sf.maltcms:cross-cache:jar:1.4.0 (compile)

      Cross Cache
      Description: There is currently no description associated with this project. URL: http://maltcms.sourceforge.net/maven/cross/1.4.0/cross-cache Project License: L-GPL v3Eclipse Public License (EPL)

    • org.slf4j:slf4j-log4j12:jar:1.7.2 (compile)

      SLF4J LOG4J-12 Binding
      Description: SLF4J LOG4J-12 Binding URL: http://www.slf4j.org Project License: MIT License

    • log4j:log4j:jar:1.2.17 (compile)

      Apache Log4j
      Description: Apache Log4j 1.2 URL: http://logging.apache.org/log4j/1.2/ Project License: The Apache Software License, Version 2.0

    • org.slf4j:slf4j-api:jar:1.7.2 (compile)

      SLF4J API Module
      Description: The slf4j API URL: http://www.slf4j.org Project License: MIT License

    • org.netbeans.api:org-openide-util-lookup-osgi:jar:8.0.1 (compile)

      org-openide-util-lookup-osgi
      Description: Artifactory auto generated POM Project License: No license is defined for this project.

    • net.sf.ehcache:ehcache:jar:2.7.2 (compile)

      ehcache
      Description: Ehcache is an open source, standards-based cache used to boost performance, offload the database and simplify scalability. Ehcache is robust, proven and full-featured and this has made it the most widely-used Java-based cache. URL: http://ehcache.org Project License: The Apache Software License, Version 2.0

  • net.sf.maltcms:cross-test:jar:1.4.0 (test)

    Cross Test
    Description: There is currently no description associated with this project. URL: http://maltcms.sourceforge.net/maven/cross/1.4.0/cross-test Project License: L-GPL v3Eclipse Public License (EPL)

  • org.projectlombok:lombok:jar:1.14.2 (provided)

    Project Lombok
    Description: Spice up your java: Automatic Resource Management, automatic generation of getters, setters, equals, hashCode and toString, and more! URL: http://projectlombok.org Project License: The MIT License

  • junit:junit:jar:4.11 (test)

    JUnit
    Description: JUnit is a regression testing framework written by Erich Gamma and Kent Beck. It is used by the developer who implements unit tests in Java. URL: http://junit.org Project License: Common Public License Version 1.0

    • org.hamcrest:hamcrest-core:jar:1.3 (test)

      Hamcrest Core
      Description: This is the core API of hamcrest matcher framework to be used by third-party framework providers. This includes the a foundation set of matcher implementations for common operations. URL: https://github.com/hamcrest/JavaHamcrest/hamcrest-core Project License: New BSD License