compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type License
net.sf.maltcms maltcms-ap-distribution 1.3.2 pom L-GPL v3-Eclipse Public License (EPL)

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Type License
junit junit 4.11 jar Common Public License Version 1.0
net.sf.maltcms cross-test 1.4.0 jar L-GPL v3-Eclipse Public License (EPL)

provided

The following is a list of provided dependencies for this project. These dependencies are required to compile the application, but should be provided by default when using the library:

GroupId ArtifactId Version Type License
org.projectlombok lombok 1.14.2 jar The MIT License

Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type License
acs.lbl.gov colt-osgi 1.2.0 jar -
com.carrotsearch hppc 0.5.3 jar The Apache Software License, Version 2.0
com.db4o db4o-all 8.0.249 jar -
com.h2database h2 1.3.170 jar The H2 License, Version 1.0
com.sun.xml.bind jaxb-impl 2.1.12 jar -
com.sun.xml.bind jaxb-xjc 2.1.7 jar -
commons-cli commons-cli 1.2 jar The Apache Software License, Version 2.0
commons-codec commons-codec 1.5 jar The Apache Software License, Version 2.0
commons-collections commons-collections 3.2.1 jar The Apache Software License, Version 2.0
commons-configuration commons-configuration 1.9 jar The Apache Software License, Version 2.0
commons-io commons-io 2.4 jar The Apache Software License, Version 2.0
commons-lang commons-lang 2.6 jar The Apache Software License, Version 2.0
cpdetector cpdetector 1.0.7 jar -
edu.ucar.unidata netcdf-osgi 4.2.35 jar -
jakarta-regexp jakarta-regexp 1.4 jar -
jargs jargs 1.0 jar -
javax.activation activation 1.1 jar Common Development and Distribution License (CDDL) v1.0
javax.media.jai com.springsource.javax.media.jai.codec 1.1.3 jar -
javax.media.jai com.springsource.javax.media.jai.core 1.1.3 jar -
javax.xml.bind jaxb-api 2.1 jar -
javax.xml.stream stax-api 1.0-2 jar GNU General Public Library-COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0
log4j log4j 1.2.17 jar The Apache Software License, Version 2.0
net.sf.ehcache ehcache 2.7.2 jar src/assemble/EHCACHE-CORE-LICENSE.txt
net.sf.maltcms cross-annotations 1.4.0 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms cross-cache 1.4.0 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms cross-event 1.4.0 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms cross-exception 1.4.0 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms cross-main 1.4.0 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms cross-math 1.4.0 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms cross-tools 1.4.0 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-ap 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-apps 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-chroma 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-chroma4D 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-chroma4D-cwt 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-chroma4D-srg 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-commands 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-cv 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-datastructures 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-datastructures-quadtree 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-db 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-distribution 1.3.2 pom L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-evaluation 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-execution 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-experimental 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-filters 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-io 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-io-csv 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-io-mz5 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-io-mzdata 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-io-mzml 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-io-mzxml 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-io-netcdf 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-io-openms-featurexml 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-io-xlsx 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-resources 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-spectratyping 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-sralign 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-statistics 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-ui 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-xml-alignment 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms maltcms-xml-annotation 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms.net.sf.jexcelapi jxl-osgi 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.maltcms.org.apache.poi poi-osgi 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
net.sf.mpaxs mpaxs-api 1.7.0 jar GNU Lesser General Public License (LGPL)-Eclipse Public License (EPL)
net.sf.mpaxs mpaxs-computeHost 1.7.0 jar GNU Lesser General Public License (LGPL)-Eclipse Public License (EPL)
net.sf.mpaxs mpaxs-drmaa-spi 1.7.0 jar GNU Lesser General Public License (LGPL)-Eclipse Public License (EPL)
net.sf.mpaxs mpaxs-server 1.7.0 jar GNU Lesser General Public License (LGPL)-Eclipse Public License (EPL)
net.sf.mpaxs mpaxs-spi 1.7.0 jar GNU Lesser General Public License (LGPL)-Eclipse Public License (EPL)
org.antlr com.springsource.antlr 2.7.7 jar -
org.aopalliance com.springsource.org.aopalliance 1.0.0 jar -
org.apache.commons com.springsource.org.apache.commons.httpclient 3.1.0 jar -
org.apache.commons com.springsource.org.apache.commons.io 1.4.0 jar -
org.apache.commons com.springsource.org.apache.commons.logging 1.1.1 jar -
org.apache.commons commons-csv 1.0 jar The Apache Software License, Version 2.0
org.apache.commons commons-math 2.2 jar The Apache Software License, Version 2.0
org.apache.commons commons-math3 3.2 jar The Apache Software License, Version 2.0
org.apache.log4j com.springsource.org.apache.log4j 1.2.15 jar -
org.codehaus.groovy groovy-all 1.8.9 jar The Apache Software License, Version 2.0
org.gff.drmaa sun-drmaa-impl-osgi 1.0.0 jar -
org.jdom com.springsource.org.jdom 1.1.0 jar -
org.jfree jfreechart-osgi 1.3.2 jar L-GPL v3-Eclipse Public License (EPL)
org.mozilla.intl chardet 1.0 jar -
org.netbeans.api org-openide-util-lookup-osgi 8.0.1 jar -
org.netbeans.api wizard-osgi 0.998.1 jar -
org.slf4j slf4j-api 1.7.2 jar MIT License
org.slf4j slf4j-log4j12 1.7.2 jar MIT License
org.springframework org.springframework.aop 3.2.4.RELEASE jar -
org.springframework org.springframework.beans 3.2.4.RELEASE jar -
org.springframework org.springframework.context 3.2.4.RELEASE jar -
org.springframework org.springframework.core 3.2.4.RELEASE jar -
org.springframework org.springframework.expression 3.2.4.RELEASE jar -
org.swinglabs swing-layout-osgi 1.0.3 jar -
psidev.psi.tools xxindex 0.11 jar The Apache Software License, Version 2.0
uk.ac.ebi.jmzml jmzml-osgi 1.6.8 jar The Apache Software License 2.0
uk.ac.ebi.pride.tools jmzreader 1.2.0 jar Apache 2
uk.ac.ebi.pride.tools mzxml-parser 1.3.3 jar Apache 2

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Type License
org.hamcrest hamcrest-core 1.3 jar New BSD License

Project Dependency Graph

Dependency Tree

Licenses

GNU Lesser General Public License (LGPL): mpaxs-api, mpaxs-computeHost, mpaxs-drmaa-spi, mpaxs-server, mpaxs-spi

New BSD License: Hamcrest Core

Apache 2: jMzReader core library, mzxml-parser

The Apache Software License 2.0: MzML Java core API

Unknown: chardet, colt-osgi, com.springsource.antlr, com.springsource.javax.media.jai.codec, com.springsource.javax.media.jai.core, com.springsource.org.aopalliance, com.springsource.org.apache.commons.httpclient, com.springsource.org.apache.commons.io, com.springsource.org.apache.commons.logging, com.springsource.org.apache.log4j, com.springsource.org.jdom, cpdetector, db4o-all, jakarta-regexp, jargs, jaxb-api, jaxb-impl, jaxb-xjc, netcdf-osgi, org-openide-util-lookup-osgi, org.springframework.aop, org.springframework.beans, org.springframework.context, org.springframework.core, org.springframework.expression, sun-drmaa-impl-osgi, swing-layout-osgi, wizard-osgi

Eclipse Public License (EPL): Cross Annotations, Cross Cache, Cross Events, Cross Exceptions, Cross Main, Cross Math, Cross Test, Cross Tools, JFreeChart OSGI, JXL OSGI, Maltcms Analytical Pyrolysis, Maltcms Analytical Pyrolysis Distribution Binary, Maltcms Apps, Maltcms ChromA, Maltcms ChromA4D, Maltcms ChromA4D CWT, Maltcms ChromA4D SRG, Maltcms Commands, Maltcms Controlled Vocabulary, Maltcms DB, Maltcms Datastructures, Maltcms Distribution Binary, Maltcms Distribution OSGI, Maltcms Evaluation, Maltcms Execution, Maltcms Experimental, Maltcms Filters, Maltcms IO, Maltcms IO Provider CSV, Maltcms IO Provider MZ5, Maltcms IO Provider MZDATA, Maltcms IO Provider MZML, Maltcms IO Provider MZXML, Maltcms IO Provider NetCDF, Maltcms IO Provider OpenMS FeatureXML, Maltcms IO Provider XLS(X), Maltcms QuadTree, Maltcms Runtime Resources, Maltcms Spectratyping, Maltcms Statistics, Maltcms Symbolic Rep Alignment, Maltcms UI, Maltcms Xml Alignment Format, Maltcms Xml Annotation Format, POI OSGI, mpaxs-api, mpaxs-computeHost, mpaxs-drmaa-spi, mpaxs-server, mpaxs-spi

COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0: Streaming API for XML

The Apache Software License, Version 2.0: Apache Commons CSV, Apache Log4j, Commons CLI, Commons Codec, Commons Collections, Commons Configuration, Commons IO, Commons Lang, Commons Math, Groovy, HPPC Collections, PSI :: Tools :: Xml XPath Indexer, ehcache

L-GPL v3: Cross Annotations, Cross Cache, Cross Events, Cross Exceptions, Cross Main, Cross Math, Cross Test, Cross Tools, JFreeChart OSGI, JXL OSGI, Maltcms Analytical Pyrolysis, Maltcms Analytical Pyrolysis Distribution Binary, Maltcms Apps, Maltcms ChromA, Maltcms ChromA4D, Maltcms ChromA4D CWT, Maltcms ChromA4D SRG, Maltcms Commands, Maltcms Controlled Vocabulary, Maltcms DB, Maltcms Datastructures, Maltcms Distribution Binary, Maltcms Distribution OSGI, Maltcms Evaluation, Maltcms Execution, Maltcms Experimental, Maltcms Filters, Maltcms IO, Maltcms IO Provider CSV, Maltcms IO Provider MZ5, Maltcms IO Provider MZDATA, Maltcms IO Provider MZML, Maltcms IO Provider MZXML, Maltcms IO Provider NetCDF, Maltcms IO Provider OpenMS FeatureXML, Maltcms IO Provider XLS(X), Maltcms QuadTree, Maltcms Runtime Resources, Maltcms Spectratyping, Maltcms Statistics, Maltcms Symbolic Rep Alignment, Maltcms UI, Maltcms Xml Alignment Format, Maltcms Xml Annotation Format, POI OSGI

GNU General Public Library: Streaming API for XML

The H2 License, Version 1.0: H2 Database Engine

Common Public License Version 1.0: JUnit

MIT License: SLF4J API Module, SLF4J LOG4J-12 Binding

The MIT License: Project Lombok

Common Development and Distribution License (CDDL) v1.0: JavaBeans Activation Framework (JAF)

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