maltcms.commands.fragments2d.warp
Class ScanlineMeanMSWarp

java.lang.Object
  maltcms.commands.distances.dtw.ADynamicTimeWarp
      maltcms.commands.fragments2d.warp.ScanlineMeanMSWarp

All Implemented Interfaces:

cross.commands.ICommand<cross.datastructures.tuple.Tuple2D<Array[],Array[]>,Array[]>, cross.datastructures.workflow.IWorkflowElement, cross.IConfigurable, cross.io.xml.IXMLSerializable, Serializable, IDynamicTimeWarp, PairwiseFeatureSequenceSimilarity

public class ScanlineMeanMSWarp
extends ADynamicTimeWarp

Warps two chromatogramms according to their mean mass spectra of the scan lines.

Author:

Mathias Wilhelm(mwilhelm A T TechFak.Uni-Bielefeld.DE)

See Also:

Serialized Form

Constructor Summary

ScanlineMeanMSWarp()

Method Summary

void	configure(org.apache.commons.configuration.Configuration cfg)
cross.datastructures.tuple.Tuple2D<List<Array>,List<Array>>	createTuple(cross.datastructures.tuple.Tuple2D<cross.datastructures.fragments.IFileFragment,cross.datastructures.fragments.IFileFragment> t)
String	toString()

Methods inherited from class maltcms.commands.distances.dtw.ADynamicTimeWarp

align, appendXML, apply, apply, getCumulativeDistance, getExtension, getResultFileFragment, getWorkflow, getWorkflowSlot, minimize, setExtension, setFileFragments

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface maltcms.commands.distances.dtw.IDynamicTimeWarp

getPairwiseFeatureSimilarity, getRecurrence, setPairwiseFeatureSimilarity, setRecurrence

Methods inherited from interface maltcms.commands.distances.PairwiseFeatureSequenceSimilarity

getResult, getResultVector, getStatsMap, setStatsMap

Methods inherited from interface cross.datastructures.workflow.IWorkflowElement

setWorkflow

Constructor Detail

ScanlineMeanMSWarp

public ScanlineMeanMSWarp()

Method Detail

toString

public String toString()

Overrides:

toString in class Object

configure

public void configure(org.apache.commons.configuration.Configuration cfg)

Specified by:

configure in interface cross.IConfigurable

Overrides:

configure in class ADynamicTimeWarp

createTuple

public cross.datastructures.tuple.Tuple2D<List<Array>,List<Array>> createTuple(cross.datastructures.tuple.Tuple2D<cross.datastructures.fragments.IFileFragment,cross.datastructures.fragments.IFileFragment> t)