maltcms.datastructures.peak
Class Peak2D

java.lang.Object
  maltcms.datastructures.peak.Peak1D
      maltcms.datastructures.peak.Peak2D

All Implemented Interfaces:

Serializable, Iterable<Peak1D>, IFeatureVector

public class Peak2D
extends Peak1D
implements Serializable

Dataholder for all important information about a peak.

Author:

Mathias Wilhelm(mwilhelm A T TechFak.Uni-Bielefeld.DE)

See Also:

Serialized Form

Constructor Summary

Peak2D()
Default constructor.

Method Summary

double	getArea()
double	getFirstRetTime() Getter.
int	getFirstScanIndex()
int	getIndex() Getter.
String	getName() Getter.
List<cross.datastructures.tuple.Tuple2D<Double,IMetabolite>>	getNames() Getter.
PeakArea2D	getPeakArea() Getter.
Peak2D	getReference()
double	getRetentionTime() Getter.
int	getScanIndex() Getter.
double	getSecondRetTime() Getter.
int	getSecondScanIndex()
double	getSim() Getter.
static void	main(String[] args)
void	normalizeTo(Peak2D reference)
void	setArea(double d)
void	setFirstRetTime(double nFirstRetTime) Setter.
void	setIndex(int nIndex) Setter.
void	setNames(List<cross.datastructures.tuple.Tuple2D<Double,IMetabolite>> l) Setter.
void	setPeakArea(PeakArea2D pa) Setter.
void	setScanIndex(int nScanIndex) Setter.
void	setSecondRetTime(double nSecondRetTime) Setter.

Methods inherited from class maltcms.datastructures.peak.Peak1D

getFeature, getFeatureNames, iterator

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Peak2D

public Peak2D()

Default constructor.

Parameters:

pa - peak area

Method Detail

getFirstRetTime

public double getFirstRetTime()

Getter.

Returns:

first retention time

getIndex

public int getIndex()

Getter.

Returns:

internal index

getName

public String getName()

Getter.

Returns:

name

getNames

public List<cross.datastructures.tuple.Tuple2D<Double,IMetabolite>> getNames()

Getter.

Returns:

list of score an IMetabolite.

getPeakArea

public PeakArea2D getPeakArea()

Getter.

Returns:

peak area

getRetentionTime

public double getRetentionTime()

Getter.

Returns:

getFirstRetTime() + getSecondRetTime()

getScanIndex

public int getScanIndex()

Getter.

Returns:

scan index

getSecondRetTime

public double getSecondRetTime()

Getter.

Returns:

second retention time

getSim

public double getSim()

Getter.

Returns:

similarity

setPeakArea

public void setPeakArea(PeakArea2D pa)

Setter.

Parameters:

-

setFirstRetTime

public void setFirstRetTime(double nFirstRetTime)

Setter.

Parameters:

nFirstRetTime - first retention time

setIndex

public void setIndex(int nIndex)

Setter.

Parameters:

nIndex - internal index

setNames

public void setNames(List<cross.datastructures.tuple.Tuple2D<Double,IMetabolite>> l)

Setter.

Parameters:

l - list of score an IMetabolite.

setScanIndex

public void setScanIndex(int nScanIndex)

Setter.

Parameters:

nScanIndex - scan index

setSecondRetTime

public void setSecondRetTime(double nSecondRetTime)

Setter.

Parameters:

nSecondRetTime - second retention time

getFirstScanIndex

public int getFirstScanIndex()

getSecondScanIndex

public int getSecondScanIndex()

normalizeTo

public void normalizeTo(Peak2D reference)

getReference

public Peak2D getReference()

getArea

public double getArea()

setArea

public void setArea(double d)

main

public static void main(String[] args)