Uses of Class
smueller.alignment.Alignment

Packages that use Alignment

smueller.alignment
smueller.datastructure

Uses of Alignment in smueller.alignment

Subclasses of Alignment in smueller.alignment

class	AffineAlignment
class	OneAffineAlignment

Uses of Alignment in smueller.datastructure

Methods in smueller.datastructure with parameters of type Alignment

void	AlignmentOutput.writefile(String a, String b, Vector<OptimalAlignmentVector> all, double[][] matrix, String format, double[][] dima, String location, int alnumber, Alignment ali, int aoriglen, int boriglen, cross.datastructures.workflow.IWorkflow iw)