A B C D G M N P Q S T Z

A

AnchorPairSetTest - Class in maltcms.datastructures.alignment

Test for AnchorPairSet.

AnchorPairSetTest(String) - Constructor for class maltcms.datastructures.alignment.AnchorPairSetTest

apply(TupleND<IFileFragment>) - Method in class maltcms.commands.fragments2d.peakfinding.MockFragmentCommand

AppTest - Class in maltcms.ui

Unit test for simple App.

AppTest(String) - Constructor for class maltcms.ui.AppTest

Create the test case

AppTest - Class in net.sf.maltcms

Unit test for simple App.

AppTest(String) - Constructor for class net.sf.maltcms.AppTest

Create the test case

AppTest - Class in net.sf.maltcms.maltcmsiomzxml

Unit test for simple App.

AppTest(String) - Constructor for class net.sf.maltcms.maltcmsiomzxml.AppTest

Create the test case

AppTest - Class in net.sf.maltcms.maltcmsstatistics

Unit test for simple App.

AppTest(String) - Constructor for class net.sf.maltcms.maltcmsstatistics.AppTest

Create the test case

B

BiPaceTest - Class in net.sf.maltcms.maltcms.commands

BiPaceTest() - Constructor for class net.sf.maltcms.maltcms.commands.BiPaceTest

C

CemappDtwTest - Class in net.sf.maltcms.maltcms.commands

CemappDtwTest() - Constructor for class net.sf.maltcms.maltcms.commands.CemappDtwTest

ChromATest - Class in net.sf.maltcms.maltcms.commands

ChromATest() - Constructor for class net.sf.maltcms.maltcms.commands.ChromATest

cleanUp() - Method in class net.sf.maltcms.maltcms.commands.fragments2d.preprocessing.Default2DVarLoaderTest

ColumnWiseComparisonTest - Class in net.sf.maltcms.evaluation.spi.alignment

ColumnWiseComparisonTest() - Constructor for class net.sf.maltcms.evaluation.spi.alignment.ColumnWiseComparisonTest

createPairwiseDistanceCalculatorMZI(boolean, int, boolean, double) - Method in class net.sf.maltcms.maltcms.commands.CemappDtwTest

createPairwiseDistanceCalculatorTIC(boolean, int, boolean, double) - Method in class net.sf.maltcms.maltcms.commands.CemappDtwTest

CwtPeakFinderTest - Class in maltcms.commands.fragments2d.peakfinding

CwtPeakFinderTest() - Constructor for class maltcms.commands.fragments2d.peakfinding.CwtPeakFinderTest

D

Default2DVarLoaderTest - Class in net.sf.maltcms.maltcms.commands.fragments2d.preprocessing

Default2DVarLoaderTest() - Constructor for class net.sf.maltcms.maltcms.commands.fragments2d.preprocessing.Default2DVarLoaderTest

diff(Array, Array) - Method in class maltcms.datastructures.array.tests.SparseTest

G

getDescription() - Method in class maltcms.commands.fragments2d.peakfinding.MockFragmentCommand

getWorkflowSlot() - Method in class maltcms.commands.fragments2d.peakfinding.MockFragmentCommand

M

main(String[]) - Static method in class net.sf.maltcms.maltcms.commands.fragments2d.preprocessing.Default2DVarLoaderTest

maltcms.commands.fragments2d.peakfinding - package maltcms.commands.fragments2d.peakfinding

maltcms.datastructures.alignment - package maltcms.datastructures.alignment

maltcms.datastructures.array.tests - package maltcms.datastructures.array.tests

maltcms.db.test - package maltcms.db.test

maltcms.io - package maltcms.io

maltcms.math.functions - package maltcms.math.functions

maltcms.ui - package maltcms.ui

MockFragmentCommand - Class in maltcms.commands.fragments2d.peakfinding

MockFragmentCommand() - Constructor for class maltcms.commands.fragments2d.peakfinding.MockFragmentCommand

MpaxsExecutorServiceTest - Class in net.sf.maltcms.execution.api

MpaxsExecutorServiceTest() - Constructor for class net.sf.maltcms.execution.api.MpaxsExecutorServiceTest

N

net.sf.maltcms - package net.sf.maltcms

net.sf.maltcms.evaluation - package net.sf.maltcms.evaluation

net.sf.maltcms.evaluation.spi.alignment - package net.sf.maltcms.evaluation.spi.alignment

net.sf.maltcms.execution.api - package net.sf.maltcms.execution.api

net.sf.maltcms.maltcms.commands - package net.sf.maltcms.maltcms.commands

net.sf.maltcms.maltcms.commands.fragments2d.preprocessing - package net.sf.maltcms.maltcms.commands.fragments2d.preprocessing

net.sf.maltcms.maltcmsiomzxml - package net.sf.maltcms.maltcmsiomzxml

net.sf.maltcms.maltcmsstatistics - package net.sf.maltcms.maltcmsstatistics

P

ProductPairwiseFunctionTest - Class in maltcms.math.functions

ProductPairwiseFunctionTest(String) - Constructor for class maltcms.math.functions.ProductPairwiseFunctionTest

Q

QueryDBTest - Class in maltcms.db.test

QueryDBTest(String) - Constructor for class maltcms.db.test.QueryDBTest

S

setUp() - Method in class net.sf.maltcms.evaluation.spi.alignment.ColumnWiseComparisonTest

setUp() - Method in class net.sf.maltcms.evaluation.TokenReplacerTest

setUpClass() - Static method in class net.sf.maltcms.evaluation.spi.alignment.ColumnWiseComparisonTest

setUpClass() - Static method in class net.sf.maltcms.evaluation.TokenReplacerTest

setUpClass() - Static method in class net.sf.maltcms.execution.api.MpaxsExecutorServiceTest

SparseTest - Class in maltcms.datastructures.array.tests

SparseTest(String) - Constructor for class maltcms.datastructures.array.tests.SparseTest

suite() - Static method in class maltcms.ui.AppTest

suite() - Static method in class net.sf.maltcms.AppTest

suite() - Static method in class net.sf.maltcms.maltcmsiomzxml.AppTest

suite() - Static method in class net.sf.maltcms.maltcmsstatistics.AppTest

T

tearDown() - Method in class net.sf.maltcms.evaluation.spi.alignment.ColumnWiseComparisonTest

tearDownClass() - Static method in class net.sf.maltcms.evaluation.spi.alignment.ColumnWiseComparisonTest

tearDownClass() - Static method in class net.sf.maltcms.evaluation.TokenReplacerTest

tearDownClass() - Static method in class net.sf.maltcms.execution.api.MpaxsExecutorServiceTest

testAnchorPairSet() - Method in class maltcms.datastructures.alignment.AnchorPairSetTest

testApp() - Method in class maltcms.ui.AppTest

Rigourous Test :-)

testApp() - Method in class net.sf.maltcms.AppTest

Rigourous Test :-)

testApp() - Method in class net.sf.maltcms.maltcmsiomzxml.AppTest

Rigourous Test :-)

testApp() - Method in class net.sf.maltcms.maltcmsstatistics.AppTest

Rigourous Test :-)

testApply() - Method in class maltcms.math.functions.ProductPairwiseFunctionTest

testCemappDtwMZIConstrained() - Method in class net.sf.maltcms.maltcms.commands.CemappDtwTest

testCemappDtwMZIFull() - Method in class net.sf.maltcms.maltcms.commands.CemappDtwTest

testCemappDtwTICFull() - Method in class net.sf.maltcms.maltcms.commands.CemappDtwTest

testChromA() - Method in class net.sf.maltcms.maltcms.commands.BiPaceTest

testChromA() - Method in class net.sf.maltcms.maltcms.commands.ChromATest

testDot() - Method in class maltcms.datastructures.array.tests.SparseTest

testExtract1D() - Method in class maltcms.io.ZipResourceExtractorTest

testExtract2D() - Method in class maltcms.io.ZipResourceExtractorTest

testGetCallable() - Method in class maltcms.db.test.QueryDBTest

testGetCallableCollectionOfMNumRangePredicateCollectionOfMStringMatchPredicate() - Method in class maltcms.db.test.QueryDBTest

testGetMaxIndex() - Method in class maltcms.datastructures.array.tests.SparseTest

testGetMinIndex() - Method in class maltcms.datastructures.array.tests.SparseTest

testGetShape() - Method in class maltcms.datastructures.array.tests.SparseTest

testInvoke() - Method in class maltcms.db.test.QueryDBTest

testPeakFinder() - Method in class net.sf.maltcms.maltcms.commands.fragments2d.preprocessing.Default2DVarLoaderTest

testPrepare() - Method in class maltcms.datastructures.alignment.AnchorPairSetTest

testQueryDB() - Method in class maltcms.db.test.QueryDBTest

testReplacement() - Method in class net.sf.maltcms.evaluation.TokenReplacerTest

testShutdown() - Method in class maltcms.db.test.QueryDBTest

testSomeMethod() - Method in class net.sf.maltcms.evaluation.spi.alignment.ColumnWiseComparisonTest

testToArrays() - Method in class maltcms.datastructures.array.tests.SparseTest

tf - Variable in class maltcms.io.ZipResourceExtractorTest

tf - Variable in class net.sf.maltcms.maltcms.commands.BiPaceTest

tf - Variable in class net.sf.maltcms.maltcms.commands.CemappDtwTest

tf - Variable in class net.sf.maltcms.maltcms.commands.ChromATest

tf - Variable in class net.sf.maltcms.maltcms.commands.fragments2d.preprocessing.Default2DVarLoaderTest

TokenReplacerTest - Class in net.sf.maltcms.evaluation

TokenReplacerTest() - Constructor for class net.sf.maltcms.evaluation.TokenReplacerTest

Z

ZipResourceExtractorTest - Class in maltcms.io

ZipResourceExtractorTest() - Constructor for class maltcms.io.ZipResourceExtractorTest

A B C D G M N P Q S T Z