maltcms.commands.distances.dtw
Class MZIDynamicTimeWarp

java.lang.Object
  maltcms.commands.distances.dtw.ADynamicTimeWarp
      maltcms.commands.distances.dtw.MZIDynamicTimeWarp

All Implemented Interfaces:

cross.commands.ICommand<cross.datastructures.tuple.Tuple2D<Array[],Array[]>,Array[]>, cross.datastructures.workflow.IWorkflowElement, cross.IConfigurable, cross.io.xml.IXMLSerializable, Serializable, IDynamicTimeWarp, PairwiseFeatureSequenceSimilarity

public class MZIDynamicTimeWarp
extends ADynamicTimeWarp

Implementation of Pairwise Dynamic-Time-Warping for time-series data with an evenly gridded array of mass over charge (mz) vs intensity for each time-point (scan).

Author:

Nils.Hoffmann@cebitec.uni-bielefeld.de

See Also:

Serialized Form

Constructor Summary

MZIDynamicTimeWarp()

Method Summary

void	configure(org.apache.commons.configuration.Configuration cfg)
cross.datastructures.tuple.Tuple2D<List<Array>,List<Array>>	createTuple(cross.datastructures.tuple.Tuple2D<cross.datastructures.fragments.IFileFragment,cross.datastructures.fragments.IFileFragment> t)

Methods inherited from class maltcms.commands.distances.dtw.ADynamicTimeWarp

align, appendXML, apply, apply, getCumulativeDistance, getExtension, getResultFileFragment, getWorkflow, getWorkflowSlot, minimize, setExtension, setFileFragments

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface maltcms.commands.distances.dtw.IDynamicTimeWarp

getPairwiseFeatureSimilarity, getRecurrence, setPairwiseFeatureSimilarity, setRecurrence

Methods inherited from interface maltcms.commands.distances.PairwiseFeatureSequenceSimilarity

getResult, getResultVector, getStatsMap, setStatsMap

Methods inherited from interface cross.datastructures.workflow.IWorkflowElement

setWorkflow

Constructor Detail

MZIDynamicTimeWarp

public MZIDynamicTimeWarp()

Method Detail

configure

public void configure(org.apache.commons.configuration.Configuration cfg)

Specified by:

configure in interface cross.IConfigurable

Overrides:

configure in class ADynamicTimeWarp

createTuple

public cross.datastructures.tuple.Tuple2D<List<Array>,List<Array>> createTuple(cross.datastructures.tuple.Tuple2D<cross.datastructures.fragments.IFileFragment,cross.datastructures.fragments.IFileFragment> t)