maltcms.commands.fragments2d.preprocessing
Class ModulationExtractor

java.lang.Object
  cross.commands.fragments.AFragmentCommand
      maltcms.commands.fragments2d.preprocessing.ModulationExtractor

All Implemented Interfaces:

cross.commands.fragments.IFragmentCommand, cross.commands.ICommand<cross.datastructures.tuple.TupleND<cross.datastructures.fragments.IFileFragment>,cross.datastructures.tuple.TupleND<cross.datastructures.fragments.IFileFragment>>, cross.datastructures.workflow.IWorkflowElement, cross.event.IEventSource<cross.datastructures.workflow.IWorkflowResult>, cross.IConfigurable, cross.io.xml.IXMLSerializable, Serializable

public class ModulationExtractor
extends cross.commands.fragments.AFragmentCommand

ModulationExtractor allows to subset the modulations contained in a GCxGC-MS file, by setting the global scan_index variable and the second_column_scan_index variables to their appropriate values. Therefor, downstream commands should use those variables in order to read individual modulations or use the Chromatogram2D class or one of the IScanLine implementations.

Author:

Nils.Hoffmann@CeBiTec.Uni-Bielefeld.DE

See Also:

Serialized Form

Constructor Summary

ModulationExtractor()

Method Summary

cross.datastructures.tuple.TupleND<cross.datastructures.fragments.IFileFragment>	apply(cross.datastructures.tuple.TupleND<cross.datastructures.fragments.IFileFragment> t)
void	configure(org.apache.commons.configuration.Configuration cfg)
String	getDescription()
cross.datastructures.workflow.WorkflowSlot	getWorkflowSlot()
String	toString()

Methods inherited from class cross.commands.fragments.AFragmentCommand

addListener, addWorkflowResult, addWorkflowResult, addWorkflowResult, addWorkflowResult, addWorkflowResults, addWorkflowResults, appendXML, canEqual, createBlockingCompletionService, createCompletionService, createNonBlockingCompletionService, createWorkFragment, createWorkFragments, equals, fireEvent, getProgress, getWorkflow, hashCode, initProgress, initSubCommand, mapToInput, postProcess, removeListener, setProgress, setWorkflow

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

ModulationExtractor

public ModulationExtractor()

Method Detail

toString

public String toString()

Overrides:

toString in class cross.commands.fragments.AFragmentCommand

configure

public void configure(org.apache.commons.configuration.Configuration cfg)

Specified by:

configure in interface cross.IConfigurable

Overrides:

configure in class cross.commands.fragments.AFragmentCommand

getDescription

public String getDescription()

Specified by:

getDescription in class cross.commands.fragments.AFragmentCommand

apply

public cross.datastructures.tuple.TupleND<cross.datastructures.fragments.IFileFragment> apply(cross.datastructures.tuple.TupleND<cross.datastructures.fragments.IFileFragment> t)

getWorkflowSlot

public cross.datastructures.workflow.WorkflowSlot getWorkflowSlot()