net.sf.maltcms.evaluation.spi.hohenheim
Class Eval

java.lang.Object
  extended by net.sf.maltcms.evaluation.spi.hohenheim.Eval

public class Eval
extends Object

Author:
Nils.Hoffmann@CeBiTec.Uni-Bielefeld.DE

Nested Class Summary
 class Eval.AggregatePeakPredicate
           
 class Eval.ByCreatorNameFilenameRTPeakPredicate
           
 class Eval.ByCreatorNamePeakNamePredicate
           
 class Eval.ByCreatorNamePeakPredicate
           
 class Eval.ChromatogramCreatorPeakNamePeakPredicate
           
 class Eval.ChromatogramCreatorPeakPredicate
           
 class Eval.ChromatogramNamePredicate
           
 class Eval.ChromatogramPeakPredicate
           
 class Eval.ChromatogramPredicate
           
 class Eval.CreatorPeakPredicate
           
 class Eval.CreatorPredicate
           
 class Eval.PeakPredicate
           
 class Eval.StringListByDoubleComparator
           
 
Constructor Summary
Eval(String dbdir)
           
 
Method Summary
 com.db4o.ObjectContainer createDatabase(String dbdir, boolean overwrite)
           
 com.db4o.ObjectContainer createDB(boolean overwrite, String[] args)
           
 com.db4o.ObjectSet<Chromatogram> getChromatograms(com.db4o.ObjectContainer oc)
           
 com.db4o.ObjectSet<Creator> getCreators(com.db4o.ObjectContainer oc)
           
 String getDBDir()
           
 List<String> getFilesFromFile(String filesFile)
           
 List<Peak> getMaltcmsPeaks(Creator creator, com.db4o.ObjectContainer oc, String... files)
           
 com.db4o.ObjectSet<Peak> getPeakForChromatogramByCreatorByName(com.db4o.ObjectContainer oc, Chromatogram c, String creatorname, String peakname)
           
 com.db4o.ObjectSet<Peak> getPeaks(com.db4o.ObjectContainer oc)
           
 com.db4o.ObjectSet<Peak> getPeaksByCreator(com.db4o.ObjectContainer oc, String creatorname)
           
 com.db4o.ObjectSet<Peak> getPeaksForChromatogram(com.db4o.ObjectContainer oc, Chromatogram c)
           
 com.db4o.ObjectSet<Peak> getPeaksForChromatogramByCreator(com.db4o.ObjectContainer oc, Chromatogram c, String creatorname)
           
 List<Peak> getXcaliburPeaks(Creator creator, com.db4o.ObjectContainer oc, String... files)
           
static void main(String[] args)
           
 double parseDouble(String s)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Eval

public Eval(String dbdir)
Method Detail

getDBDir

public String getDBDir()

createDB

public com.db4o.ObjectContainer createDB(boolean overwrite,
                                         String[] args)

main

public static void main(String[] args)

getChromatograms

public com.db4o.ObjectSet<Chromatogram> getChromatograms(com.db4o.ObjectContainer oc)

getCreators

public com.db4o.ObjectSet<Creator> getCreators(com.db4o.ObjectContainer oc)

getPeaksForChromatogram

public com.db4o.ObjectSet<Peak> getPeaksForChromatogram(com.db4o.ObjectContainer oc,
                                                        Chromatogram c)

getPeaksByCreator

public com.db4o.ObjectSet<Peak> getPeaksByCreator(com.db4o.ObjectContainer oc,
                                                  String creatorname)

getPeaksForChromatogramByCreator

public com.db4o.ObjectSet<Peak> getPeaksForChromatogramByCreator(com.db4o.ObjectContainer oc,
                                                                 Chromatogram c,
                                                                 String creatorname)

getPeakForChromatogramByCreatorByName

public com.db4o.ObjectSet<Peak> getPeakForChromatogramByCreatorByName(com.db4o.ObjectContainer oc,
                                                                      Chromatogram c,
                                                                      String creatorname,
                                                                      String peakname)

getPeaks

public com.db4o.ObjectSet<Peak> getPeaks(com.db4o.ObjectContainer oc)

getFilesFromFile

public List<String> getFilesFromFile(String filesFile)

createDatabase

public com.db4o.ObjectContainer createDatabase(String dbdir,
                                               boolean overwrite)

getXcaliburPeaks

public List<Peak> getXcaliburPeaks(Creator creator,
                                   com.db4o.ObjectContainer oc,
                                   String... files)

getMaltcmsPeaks

public List<Peak> getMaltcmsPeaks(Creator creator,
                                  com.db4o.ObjectContainer oc,
                                  String... files)

parseDouble

public double parseDouble(String s)


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