smueller.alignment
Class AffineAlignment

java.lang.Object
  smueller.alignment.Alignment
      smueller.alignment.AffineAlignment

public class AffineAlignment
extends Alignment

Author:

Soeren Mueller, smueller@cebitec.uni-bielefeld.de

Constructor Summary

AffineAlignment(cross.datastructures.fragments.IFileFragment ref1, cross.datastructures.fragments.IFileFragment query1)

Method Summary

void	computeMatrix(String u, String v)

Methods inherited from class smueller.alignment.Alignment

ausgabe, chartoNumber, cloneAl, createAlignments, drawMatrix, drawPathway, getAllalignments, getMatrix, getPairwiseDistance, getPathway, getQuery, getRef, getSeq1, getSeq2, mini, setKostenfunktion, setQuery, setRef, setSeq1, setSeq2, vergleiche

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AffineAlignment

public AffineAlignment(cross.datastructures.fragments.IFileFragment ref1,
                       cross.datastructures.fragments.IFileFragment query1)

Method Detail

computeMatrix

public void computeMatrix(String u,
                          String v)

Overrides:

computeMatrix in class Alignment