smueller.alignment
Class OptimalAlignmentVector

java.lang.Object
  extended by smueller.alignment.OptimalAlignmentVector
All Implemented Interfaces:
Cloneable

public class OptimalAlignmentVector
extends Object
implements Cloneable

Author:
Soeren Mueller, smueller@cebitec.uni-bielefeld.de

Constructor Summary
OptimalAlignmentVector()
           
 
Method Summary
 void addALChars(AlignedPairVector ss)
           
 void addAlChars(boolean a)
           
 void addAlChars(char a, char b)
           
 void addAlChars(char a, char b, int c, int d)
           
 void changeAlChars(int a, int b)
           
 Object clone()
           
 int countAlChars()
           
 AlignedPairVector getCharPair(int i)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

OptimalAlignmentVector

public OptimalAlignmentVector()
Method Detail

addAlChars

public void addAlChars(boolean a)

addAlChars

public void addAlChars(char a,
                       char b)

addAlChars

public void addAlChars(char a,
                       char b,
                       int c,
                       int d)

addALChars

public void addALChars(AlignedPairVector ss)

changeAlChars

public void changeAlChars(int a,
                          int b)

clone

public Object clone()
Overrides:
clone in class Object

countAlChars

public int countAlChars()

getCharPair

public AlignedPairVector getCharPair(int i)


Copyright © 2007-2012. All Rights Reserved.