public interface IRecurrence extends IConfigurable
| Modifier and Type | Method and Description |
|---|---|
double |
eval(int row,
int column,
IArrayD2Double cumDistMatrix,
double dij,
ArrayByte.D2 predecessors) |
double |
eval(int row,
int column,
IArrayD2Double previousRow,
IArrayD2Double currentRow,
double dij) |
double |
getGlobalGapPenalty() |
void |
set(double compression_weight,
double expansion_weight,
double diagonal_weight) |
void |
setMinimizing(boolean b) |
configuredouble eval(int row,
int column,
IArrayD2Double cumDistMatrix,
double dij,
ArrayByte.D2 predecessors)
double eval(int row,
int column,
IArrayD2Double previousRow,
IArrayD2Double currentRow,
double dij)
void set(double compression_weight,
double expansion_weight,
double diagonal_weight)
void setMinimizing(boolean b)
double getGlobalGapPenalty()
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