maltcms.commands.fragments.preprocessing

Class ScanExtractor

java.lang.Object

cross.commands.fragments.AFragmentCommand

maltcms.commands.fragments.preprocessing.ScanExtractor

All Implemented Interfaces:

IFragmentCommand, ICommand<TupleND<IFileFragment>,TupleND<IFileFragment>>, IWorkflowElement, IEventSource<IWorkflowResult>, IConfigurable, IXMLSerializable, Serializable

public class ScanExtractor
extends AFragmentCommand

ScanExtractor allows to extract a contiguous number of mass spectral scans from a GC/LC-MS file. This is useful for skipping lead-in scans that should be removed prior to processing or to skip data that was written incorrectly.

Author:

Nils Hoffmann

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
ScanExtractor()

Method Summary

Methods

Modifier and Type	Method and Description
TupleND<IFileFragment>	apply(TupleND<IFileFragment> t)
void	configure(org.apache.commons.configuration.Configuration config)

Methods inherited from class cross.commands.fragments.AFragmentCommand

addListener, addWorkflowResult, addWorkflowResult, addWorkflowResult, addWorkflowResult, addWorkflowResults, addWorkflowResults, appendXML, canEqual, createBlockingCompletionService, createCompletionService, createNonBlockingCompletionService, createWorkFragment, createWorkFragments, equals, fireEvent, getCvResolver, getDescription, getProgress, getWorkflow, hashCode, initProgress, initSubCommand, mapToInput, mapToInputUri, postProcess, postProcessUri, removeListener, resolve, save, setCvResolver, setProgress, setWorkflow, toString

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface cross.datastructures.workflow.IWorkflowElement

getWorkflowSlot

Constructor Detail

ScanExtractor

public ScanExtractor()

Method Detail

configure

public void configure(org.apache.commons.configuration.Configuration config)

Specified by:

configure in interface IConfigurable

Overrides:

configure in class AFragmentCommand

apply

public TupleND<IFileFragment> apply(TupleND<IFileFragment> t)