maltcms.commands.fragments.visualization

Class PairwiseAlignmentMatrixVisualizer

java.lang.Object

cross.commands.fragments.AFragmentCommand

maltcms.commands.fragments.visualization.PairwiseAlignmentMatrixVisualizer

All Implemented Interfaces:

IFragmentCommand, ICommand<TupleND<IFileFragment>,TupleND<IFileFragment>>, IWorkflowElement, IEventSource<IWorkflowResult>, IConfigurable, IXMLSerializable, Serializable

public class PairwiseAlignmentMatrixVisualizer
extends AFragmentCommand

Draw the pairwise distance and/or cumulative distance matrix used for alignment. TODO implement visualization of anchors.

Author:

Nils.Hoffmann@cebitec.uni-bielefeld.de

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
PairwiseAlignmentMatrixVisualizer()

Method Summary

Methods

Modifier and Type	Method and Description
TupleND<IFileFragment>	apply(TupleND<IFileFragment> t1)
void	configure(org.apache.commons.configuration.Configuration cfg)

Methods inherited from class cross.commands.fragments.AFragmentCommand

addListener, addWorkflowResult, addWorkflowResult, addWorkflowResult, addWorkflowResult, addWorkflowResults, addWorkflowResults, appendXML, canEqual, createBlockingCompletionService, createCompletionService, createNonBlockingCompletionService, createWorkFragment, createWorkFragments, equals, fireEvent, getCvResolver, getDescription, getProgress, getWorkflow, hashCode, initProgress, initSubCommand, mapToInput, mapToInputUri, postProcess, postProcessUri, removeListener, resolve, save, setCvResolver, setProgress, setWorkflow, toString

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface cross.datastructures.workflow.IWorkflowElement

getWorkflowSlot

Constructor Detail

PairwiseAlignmentMatrixVisualizer

public PairwiseAlignmentMatrixVisualizer()

Method Detail

apply

public TupleND<IFileFragment> apply(TupleND<IFileFragment> t1)

configure

public void configure(org.apache.commons.configuration.Configuration cfg)

Specified by:

configure in interface IConfigurable

Overrides:

configure in class AFragmentCommand