maltcms.commands.fragments2d.peakfinding.bbh

Class BiPaceBidirectionalBestHit

java.lang.Object

maltcms.commands.fragments2d.peakfinding.bbh.BiPaceBidirectionalBestHit

All Implemented Interfaces:

IConfigurable, Serializable, IBidirectionalBestHit

public class BiPaceBidirectionalBestHit
extends Object
implements IBidirectionalBestHit

Author:

Nils.Hoffmann@cebitec.uni-bielefeld.de

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
BiPaceBidirectionalBestHit()

Method Summary

Methods

Modifier and Type	Method and Description
void	clear()
void	configure(org.apache.commons.configuration.Configuration c)
List<List<Point>>	getBidiBestHitList(List<List<Peak2D>> peaklists) Getter.
double	sim(Peak2D p1, Peak2D p2)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BiPaceBidirectionalBestHit

public BiPaceBidirectionalBestHit()

Method Detail

getBidiBestHitList

public List<List<Point>> getBidiBestHitList(List<List<Peak2D>> peaklists)

Description copied from interface: IBidirectionalBestHit

Getter.

Specified by:

getBidiBestHitList in interface IBidirectionalBestHit

Parameters:

peaklists - list of peak list for all chromatograms

Returns:

a list of all bidirectional best hits. List contains the indices of peak in the peaklist.

sim

public double sim(Peak2D p1,
         Peak2D p2)

Specified by:

sim in interface IBidirectionalBestHit

Parameters:

p1 -

p2 -

Returns:

clear

public void clear()

Specified by:

clear in interface IBidirectionalBestHit

configure

public void configure(org.apache.commons.configuration.Configuration c)

Specified by:

configure in interface IConfigurable

Parameters:

c -