maltcms.datastructures.alignment

Class AnchorPairSet

java.lang.Object

maltcms.datastructures.alignment.DefaultPairSet<IAnchor>

maltcms.datastructures.alignment.AnchorPairSet

All Implemented Interfaces:

Iterable<Tuple2D<IAnchor,IAnchor>>

public class AnchorPairSet
extends DefaultPairSet<IAnchor>

Represents a set of matched pairs of anchors.

Author:

Nils.Hoffmann@cebitec.uni-bielefeld.de

Constructor Summary

Constructors

Constructor and Description
AnchorPairSet(List<IAnchor> a1, List<IAnchor> a2, int rows, int cols)
AnchorPairSet(List<IAnchor> a1, List<IAnchor> a2, int rows, int cols, int minScansBetweenAnchors)

Method Summary

Methods

Modifier and Type	Method and Description
List<Tuple2D<IAnchor,IAnchor>>	checkAnchors(int rows, int cols, List<Tuple2D<IAnchor,IAnchor>> l, int minScansBetweenAnchors)

Methods inherited from class maltcms.datastructures.alignment.DefaultPairSet

checkConsistency, getCorrespondingScans, getMinScansBetweenAnchors, getSize, iterator, setMinScansBetweenAnchors

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnchorPairSet

public AnchorPairSet(List<IAnchor> a1,
             List<IAnchor> a2,
             int rows,
             int cols,
             int minScansBetweenAnchors)

AnchorPairSet

public AnchorPairSet(List<IAnchor> a1,
             List<IAnchor> a2,
             int rows,
             int cols)

Method Detail

checkAnchors

public List<Tuple2D<IAnchor,IAnchor>> checkAnchors(int rows,
                                          int cols,
                                          List<Tuple2D<IAnchor,IAnchor>> l,
                                          int minScansBetweenAnchors)