Package maltcms.datastructures.ms

Interface Summary

Interface	Description
IAnchor	Interface for alignment anchors.
IChromatogram	Interface representing a Chromatogram.
IChromatogram1D	Interface representing a 1-dimensional chromatogram.
IChromatogram2D	Interface representing a 2-dimensional chromatogram.
IExperiment	Interface representing an experiment.
IExperiment1D	Interface representing an experiment containing a 1-dimensional chromatogram.
IExperiment2D	Interface representing a 2-dimensional chromatogram.
IMetabolite	Interface representing a Metabolite.
IRetentionInfo	Interface extending a simple anchor, adding retention index and time info.
IRetentionInfo2D	Interface adding retention index 2d and time 2d info.
IScan	Interface representing a Scan (usually an MS scan).
IScan1D
IScan1DProvider
IScan2D
IScan2DProvider
IScanProvider<T extends IScan>	Interface giving access to specific scans within an experiment.
ITreatmentGroup<T extends IChromatogram>

Class Summary

Class	Description
Chromatogram1D	Concrete Implementation of a 1-dimensional chromatogram.
Chromatogram2D	Concrete Implementation of a 1-dimensional chromatogram.
ChromatogramFactory
Experiment1D	Concrete implementation of an Experiment containing a 1-dimensional chromatogram.
Experiment2D	Concrete Implementation containing a 2-dimensional chromatogram, e.g. from GCxGC-MS.
ExperimentFactory	Factory to create Experiments.
Metabolite	Concrete implementation of a Metabolite.
Metabolite2D
ProfileChromatogram1D
RetentionInfo	Concrete implementation of IRetentionInfo.
Scan1D	Implementation of a 1-dimensional scan.
Scan2D	Specialization of Scan1D, adding second column times and indices, indicating the modulation periods scans belong to.
TreatmentGroup1D
TreatmentGroup2D