public class SymbolicRepresentationAlignment extends AFragmentCommand
| Constructor and Description |
|---|
SymbolicRepresentationAlignment() |
| Modifier and Type | Method and Description |
|---|---|
TupleND<IFileFragment> |
apply(TupleND<IFileFragment> t) |
void |
configure(org.apache.commons.configuration.Configuration cfg) |
static OneAffineAlignment |
getAl() |
static int |
getAlphabetgr() |
static BreakPoints |
getBpois() |
String |
getDescription() |
static DistanceMatrix |
getDistmatrix() |
static int |
getFenstergr() |
static double |
getGapinit() |
static SortedJavArrays |
getSorti() |
static Standardizer |
getStand() |
WorkflowSlot |
getWorkflowSlot() |
static void |
main(String[] args) |
void |
saveToCSV(IFileFragment pwdist,
ArrayDouble.D2 distances,
ArrayChar.D2 names) |
addListener, addWorkflowResult, addWorkflowResult, addWorkflowResult, addWorkflowResult, addWorkflowResults, addWorkflowResults, appendXML, canEqual, createBlockingCompletionService, createCompletionService, createNonBlockingCompletionService, createWorkFragment, createWorkFragments, equals, fireEvent, getCvResolver, getProgress, getWorkflow, hashCode, initProgress, initSubCommand, mapToInput, mapToInputUri, postProcess, postProcessUri, removeListener, resolve, save, setCvResolver, setProgress, setWorkflow, toStringpublic static OneAffineAlignment getAl()
public static int getAlphabetgr()
public static BreakPoints getBpois()
public static DistanceMatrix getDistmatrix()
public static int getFenstergr()
public static double getGapinit()
public static SortedJavArrays getSorti()
public static Standardizer getStand()
public static void main(String[] args)
args - public TupleND<IFileFragment> apply(TupleND<IFileFragment> t)
public void configure(org.apache.commons.configuration.Configuration cfg)
configure in interface IConfigurableconfigure in class AFragmentCommandpublic String getDescription()
getDescription in class AFragmentCommandpublic WorkflowSlot getWorkflowSlot()
public void saveToCSV(IFileFragment pwdist, ArrayDouble.D2 distances, ArrayChar.D2 names)
pwdist - distances - names - Copyright © 2007-2013. All Rights Reserved.