Hierarchy For All Packages

Package Hierarchies:

• maltcms.commands.distances,
• maltcms.commands.distances.dtw,
• maltcms.commands.distances.dtwng,
• maltcms.datastructures.fragments,
• maltcms.math.functions,
• maltcms.math.functions.similarities

Class Hierarchy

• java.lang.Object
  • maltcms.commands.distances.dtw.ADynamicTimeWarp (implements maltcms.commands.distances.dtw.IDynamicTimeWarp)
    • maltcms.commands.distances.dtw.MZIDynamicTimeWarp
    • maltcms.commands.distances.dtw.TICDynamicTimeWarp
  • maltcms.commands.distances.dtwng.AlignmentFactory
  • maltcms.math.functions.similarities.ArrayBhattacharryya (implements maltcms.math.functions.IArraySimilarity)
  • maltcms.math.functions.similarities.ArrayCorr (implements maltcms.math.functions.IArraySimilarity)
  • maltcms.math.functions.similarities.ArrayCos (implements maltcms.math.functions.IArraySimilarity)
  • maltcms.math.functions.similarities.ArrayCosLp (implements maltcms.math.functions.IArraySimilarity)
  • maltcms.math.functions.similarities.ArrayCov (implements maltcms.math.functions.IArraySimilarity)
  • maltcms.math.functions.similarities.ArrayDot (implements maltcms.math.functions.IArraySimilarity)
  • maltcms.math.functions.similarities.ArrayDotLp (implements maltcms.math.functions.IArraySimilarity)
  • maltcms.math.functions.similarities.ArrayDotMap (implements maltcms.math.functions.IArraySimilarity)
  • maltcms.math.functions.similarities.ArrayHamming (implements maltcms.math.functions.IArraySimilarity)
  • maltcms.math.functions.similarities.ArrayLp (implements maltcms.math.functions.IArraySimilarity)
  • maltcms.math.functions.similarities.ArrayRankCorr (implements maltcms.math.functions.IArraySimilarity)
  • maltcms.math.functions.similarities.ArrayTanimoto (implements maltcms.math.functions.IArraySimilarity)
  • maltcms.math.functions.similarities.ArrayWeightedCosine (implements maltcms.math.functions.IArraySimilarity)
  • maltcms.commands.distances.dtwng.DTW (implements maltcms.commands.distances.dtwng.IAlignment, java.io.Serializable)
  • maltcms.math.functions.DtwPairwiseSimilarity (implements maltcms.commands.distances.IDtwSimilarityFunction)
  • maltcms.commands.distances.DtwRecurrence (implements maltcms.commands.distances.IRecurrence)
  • maltcms.math.functions.DtwTimePenalizedPairwiseSimilarity (implements maltcms.commands.distances.IDtwSimilarityFunction)
  • maltcms.math.functions.similarities.GaussianDifferenceSimilarity (implements maltcms.math.functions.IScalarSimilarity)
  • maltcms.math.functions.similarities.InverseGaussianDifferenceSimilarity (implements maltcms.math.functions.IScalarSimilarity)
  • maltcms.commands.distances.dtwng.NodeBuilder
    • maltcms.commands.distances.dtwng.ContinuityArgmaxNodeBuilder
    • maltcms.commands.distances.dtwng.IdentityNodeBuilder
  • maltcms.datastructures.fragments.PairwiseAlignment (implements cross.IConfigurable, cross.io.IFileFragmentProvider, cross.datastructures.workflow.IWorkflowElement)
  • maltcms.datastructures.fragments.PairwiseDistances (implements cross.IConfigurable, maltcms.datastructures.IFileFragmentModifier, cross.datastructures.workflow.IWorkflowElement)
  • maltcms.commands.distances.PairwiseFeatureSimilarity (implements cross.IConfigurable)
  • maltcms.commands.distances.PartitionCalculator (implements java.util.concurrent.Callable<V>, cross.IConfigurable)
  • maltcms.math.functions.ProductSimilarity (implements maltcms.math.functions.IScalarArraySimilarity)
  • maltcms.math.functions.similarities.SimilarityTools
  • maltcms.commands.distances.dtwng.ThreePredecessorsOptimization (implements maltcms.commands.distances.dtwng.IOptimizationFunction)
  • maltcms.commands.distances.dtwng.TwoFeatureVectorOperation (implements cross.IConfigurable)
    • maltcms.commands.distances.dtwng.FeatureVectorDtwSimilarity

Interface Hierarchy

• cross.io.xml.IXMLSerializable
  • maltcms.commands.distances.dtw.IDynamicTimeWarp
  • cross.datastructures.workflow.IWorkflowElement
    • maltcms.commands.distances.dtw.IDynamicTimeWarp
    • maltcms.commands.distances.PairwiseFeatureSequenceSimilarity (also extends cross.commands.ICommand<IN,OUT>)
      • maltcms.commands.distances.dtw.IDynamicTimeWarp
  • maltcms.commands.distances.PairwiseFeatureSequenceSimilarity (also extends cross.commands.ICommand<IN,OUT>, cross.datastructures.workflow.IWorkflowElement)
    • maltcms.commands.distances.dtw.IDynamicTimeWarp
• java.io.Serializable
  • maltcms.commands.distances.dtwng.IAlignment
  • maltcms.math.functions.IArraySimilarity
  • cross.commands.ICommand<IN,OUT>
    • maltcms.commands.distances.dtw.IDynamicTimeWarp
    • maltcms.commands.distances.PairwiseFeatureSequenceSimilarity (also extends cross.datastructures.workflow.IWorkflowElement)
      • maltcms.commands.distances.dtw.IDynamicTimeWarp
  • cross.IConfigurable
    • maltcms.commands.distances.dtwng.IAlignment
    • cross.commands.ICommand<IN,OUT>
      • maltcms.commands.distances.dtw.IDynamicTimeWarp
      • maltcms.commands.distances.PairwiseFeatureSequenceSimilarity (also extends cross.datastructures.workflow.IWorkflowElement)
        • maltcms.commands.distances.dtw.IDynamicTimeWarp
    • maltcms.commands.distances.IDtwSimilarityFunction
    • maltcms.commands.distances.dtw.IDynamicTimeWarp
    • maltcms.datastructures.IFileFragmentModifier
      • maltcms.commands.distances.dtwng.IAlignment
      • maltcms.commands.distances.dtwng.IOptimizationFunction
      • maltcms.commands.distances.dtwng.IPairwiseFeatureVectorSequenceOperation<RESULT>
        • maltcms.commands.distances.dtwng.IAlignment
    • maltcms.commands.distances.dtwng.IOptimizationFunction
    • maltcms.commands.distances.dtwng.IPairwiseFeatureVectorSequenceOperation<RESULT>
      • maltcms.commands.distances.dtwng.IAlignment
    • maltcms.commands.distances.IRecurrence
    • maltcms.commands.distances.PairwiseFeatureSequenceSimilarity (also extends cross.commands.ICommand<IN,OUT>, cross.datastructures.workflow.IWorkflowElement)
      • maltcms.commands.distances.dtw.IDynamicTimeWarp
  • maltcms.commands.distances.IDtwSimilarityFunction
  • maltcms.commands.distances.dtw.IDynamicTimeWarp
  • maltcms.datastructures.IFileFragmentModifier
    • maltcms.commands.distances.dtwng.IAlignment
    • maltcms.commands.distances.dtwng.IOptimizationFunction
    • maltcms.commands.distances.dtwng.IPairwiseFeatureVectorSequenceOperation<RESULT>
      • maltcms.commands.distances.dtwng.IAlignment
  • maltcms.commands.distances.dtwng.IOptimizationFunction
  • maltcms.commands.distances.dtwng.IPairwiseFeatureVectorSequenceOperation<RESULT>
    • maltcms.commands.distances.dtwng.IAlignment
  • maltcms.commands.distances.IRecurrence
  • maltcms.math.functions.IScalarArraySimilarity
  • maltcms.math.functions.IScalarSimilarity
  • maltcms.commands.distances.PairwiseFeatureSequenceSimilarity (also extends cross.commands.ICommand<IN,OUT>, cross.datastructures.workflow.IWorkflowElement)
    • maltcms.commands.distances.dtw.IDynamicTimeWarp

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • maltcms.commands.distances.dtwng.ThreePredecessorsOptimization.State