A C E G I M P R S T

A

apply(IFeatureVector, IFeatureVector) - Method in class maltcms.experimental.operations.MSPeaklistAlignment

apply(Array, Array, Array, Array) - Method in class maltcms.experimental.operations.MSPeaklistAlignment

apply.

C

calculateEditDistanceMatrix(String, String) - Method in class maltcms.experimental.operations.EditDistance

Calculates the edit distance matrix of strings a and b.

configure(Configuration) - Method in class maltcms.experimental.operations.MSPeaklistAlignment

E

EditDistance - Class in maltcms.experimental.operations

Implementation of the Edit-Distance on Strings.

EditDistance() - Constructor for class maltcms.experimental.operations.EditDistance

G

getDistance(String, String) - Method in class maltcms.experimental.operations.EditDistance

Calculates the Edit-Distance on Strings a and b.

I

ImagePanel - Class in maltcms.experimental.ui

ImagePanel class.

ImagePanel() - Constructor for class maltcms.experimental.ui.ImagePanel

isMinimize() - Method in class maltcms.experimental.operations.MSPeaklistAlignment

M

maltcms.experimental.operations - package maltcms.experimental.operations

maltcms.experimental.ui - package maltcms.experimental.ui

matchMass(double, double, double) - Method in class maltcms.experimental.operations.MSPeaklistAlignment

matchMass.

MSPeaklistAlignment - Class in maltcms.experimental.operations

MSPeaklistAlignment class.

MSPeaklistAlignment() - Constructor for class maltcms.experimental.operations.MSPeaklistAlignment

P

peakCntAlignment(double[], double[], double[], double[]) - Method in class maltcms.experimental.operations.MSPeaklistAlignment

peakCntAlignment.

printAlignment(String, String, String) - Method in class maltcms.experimental.operations.EditDistance

Prints the alignment of Strings a and b, given an edit sequence.

printMatrix(double[][], double[], double[]) - Method in class maltcms.experimental.operations.MSPeaklistAlignment

printMatrix.

R

recurse(double[][], int, int, double, double, double, double, Point[][]) - Method in class maltcms.experimental.operations.MSPeaklistAlignment

recurse.

S

setData(double[][], double[], double[]) - Method in class maltcms.experimental.ui.ImagePanel

setData.

T

traceback(int[][]) - Method in class maltcms.experimental.operations.EditDistance

Returns a String encoding an optimal edit sequence, recovered from the edit matrix d.

traceback(Point[][]) - Method in class maltcms.experimental.operations.MSPeaklistAlignment

traceback.

A C E G I M P R S T