Project Modules
This project has declared the following modules:
| Name | Description |
|---|---|
| Maltcms Test Tools | Test utilities and datasets. |
| Maltcms Apps | The Maltcms CLI Application. |
| Maltcms ChromA | Algorithms and Commands mainly for 1D Chromatography. |
| Maltcms ChromA4D | Algorithms and Commands mainly for 2D Chromatography. |
| Maltcms ChromA4D CWT | Continuous Wavelet Transform based Peakfinding for 2D Chromatography. |
| Maltcms ChromA4D SRG | Seeded MS-based Region Growing for Peak Integration in 2D Chromatography. |
| Maltcms Filters | Implementations of Filters for Array Data. |
| Maltcms Commands | Similarities for Feature Vectors and Time Series thereof, such as Cosine and Dynamic Time Warping. |
| Maltcms Datastructures | Datastructures for Chromatography and Mass Spectrometry. |
| Maltcms QuadTree | Generic 2D Spatial Index Datastructure mainly for 2D Chromatography. |
| Maltcms Execution | (Deprecated) Local Execution of Maltcms. |
| Maltcms IO | IO Utilities for CSV and Color Ramps. |
| Maltcms UI | Utilities for Charting and Plotting. |
| Maltcms DB | Utilities for Metabolite DB Creation and Search/Identification. |
| Maltcms Experimental | (Experimental) Implementations, Testbed for new Developments. |
| Maltcms Statistics | (Experimental) Implementation of Log-Delta Evaluation for Metabolite Abundances. |
| Maltcms Symbolic Rep Alignment | (Deprecated) Implementation of Sub-Sampled 1D Time Series Alignment. |
| Maltcms Spectratyping | (Experimental) Pipeline for Spectratyping. |
| Maltcms Xml Alignment Format | Maltcms XML Alignment Format Schema and Implementation. |
| Maltcms Xml Annotation Format | Maltcms XML Feature Format Schema and Implementation. |
| Maltcms Runtime Resources | Required Resources for the Maltcms Application. |
| Maltcms IO Provider NetCDF | Datasource Implementation for NetCDF, ANDI-MS, and ANDI-CHROM. |
| Maltcms IO Provider MZXML | (Deprecated) Datasource Implementation for mzXML. |
| Maltcms IO Provider MZDATA | (Deprecated) Datasource Implementation for mzData. |
| Maltcms IO Provider MZML | Datasource Implementation for MzML. |
| Maltcms IO Provider MZ5 | (Experimental) Datasource Implementation for MZ5. |
| Maltcms IO Provider CSV | Parser Support for ChromaTOF, GC Image, and FSA Formats. |
| Maltcms IO Provider XLS(X) | Datasource Implementation for MS XLS(X). |
| Maltcms IO Provider OpenMS FeatureXML | XML Binding Parser for OpenMS FeatureXML Format. |
| Maltcms IO Provider mzTab | (Highly Experimental) Support for mzTab Creation and Export. |
| Maltcms Evaluation | Utilities for Comparison of Multiple Peak Alignments. |
| Maltcms Distribution Binary | Creates the Maltcms Binary Distribution. |
| Maltcms Analytical Pyrolysis Distribution Binary | Creates the Maltcms Binary Distribution for Analytical Pyrolysis. |
| Maltcms Distribution OSGI | (Experimental) Creates the Maltcms OSGI Bundle Distribution. |
| Maltcms Distribution NBM | Creates the Maltcms NetBeans Module (NBM) Cluster. |
| Maltcms Controlled Vocabulary | Controlled Vocabulary Term Resolution for Variable Names. |
| Maltcms Analytical Pyrolysis | User Interface and Implementation for Analytical Pyrolysis Workflows. |
| JXL OSGI | OSGI Wrapper module for JXL API http://jexcelapi.sourceforge.net/ |
| POI OSGI | OSGI Wrapper module for Apache POI API http://poi.apache.org/ |
| JFreeChart OSGI | OSGI Wrapper module for JFreeChart, http://www.jfree.org |
| Maltcms Microbenchmarks | Testing Module for Performance Evaluation of Similarity Functions. |