maltcms.commands.fragments2d.peakfinding.bbh
Interface IBidirectionalBestHit

All Superinterfaces:

cross.IConfigurable, Serializable

All Known Implementing Classes:

BidirectionalBestHit, BiPaceBidirectionalBestHit, FastBidirectionalBestHit

public interface IBidirectionalBestHit
extends cross.IConfigurable

Interface for an BBH algorithm used by SeededRegionGrowing.

Author:

Mathias Wilhelm(mwilhelm A T TechFak.Uni-Bielefeld.DE)

Method Summary

void	clear()
List<List<Point>>	getBidiBestHitList(List<List<Peak2D>> peaklists) Getter.
double	sim(Peak2D p1, Peak2D p2)

Methods inherited from interface cross.IConfigurable

configure

Method Detail

getBidiBestHitList

List<List<Point>> getBidiBestHitList(List<List<Peak2D>> peaklists)

Getter.

Parameters:

peaklists - list of peak list for all chromatograms

Returns:

a list of all bidirectional best hits. List contains the indices of peak in the peaklist.

sim

double sim(Peak2D p1,
           Peak2D p2)

clear

void clear()