smueller.alignment

Class OptimalAlignmentVector

java.lang.Object

smueller.alignment.OptimalAlignmentVector

All Implemented Interfaces:

Cloneable

public class OptimalAlignmentVector
extends Object
implements Cloneable

Author:

Soeren Mueller, smueller@cebitec.uni-bielefeld.de

Constructor Summary

Constructors

Constructor and Description
OptimalAlignmentVector()

Method Summary

Methods

Modifier and Type	Method and Description
void	addALChars(AlignedPairVector ss)
void	addAlChars(boolean a)
void	addAlChars(char a, char b)
void	addAlChars(char a, char b, int c, int d)
void	changeAlChars(int a, int b)
Object	clone()
int	countAlChars()
AlignedPairVector	getCharPair(int i)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OptimalAlignmentVector

public OptimalAlignmentVector()

Method Detail

addAlChars

public void addAlChars(boolean a)

Parameters:

a -

addAlChars

public void addAlChars(char a,
              char b)

Parameters:

a -

b -

addAlChars

public void addAlChars(char a,
              char b,
              int c,
              int d)

Parameters:

a -

b -

c -

d -

addALChars

public void addALChars(AlignedPairVector ss)

Parameters:

ss -

changeAlChars

public void changeAlChars(int a,
                 int b)

Parameters:

a -

b -

clone

public Object clone()

Overrides:

clone in class Object

Returns:

countAlChars

public int countAlChars()

Returns:

getCharPair

public AlignedPairVector getCharPair(int i)

Parameters:

i -

Returns: