public class Alignment extends Object
| Constructor and Description |
|---|
Alignment(IFileFragment ref1,
IFileFragment query1) |
| Modifier and Type | Method and Description |
|---|---|
void |
ausgabe() |
int |
chartoNumber(char a) |
void |
cloneAl() |
void |
computeMatrix(String u,
String v) |
void |
createAlignments(String u,
String v) |
void |
drawMatrix() |
void |
drawPathway() |
Vector<OptimalAlignmentVector> |
getAllalignments() |
double[][] |
getMatrix() |
double[][] |
getPairwiseDistance() |
int[][][] |
getPathway() |
IFileFragment |
getQuery() |
IFileFragment |
getRef() |
String |
getSeq1() |
String |
getSeq2() |
double |
mini(double a,
double b,
double c) |
void |
setKostenfunktion(double[][] kostenfunktion1) |
void |
setQuery(IFileFragment query1) |
void |
setRef(IFileFragment ref1) |
void |
setSeq1(String seq11) |
void |
setSeq2(String seq21) |
double |
vergleiche(int i,
int j) |
public Alignment(IFileFragment ref1, IFileFragment query1)
ref1 - query1 - public void ausgabe()
public int chartoNumber(char a)
a - public void cloneAl()
public void drawMatrix()
public void drawPathway()
public Vector<OptimalAlignmentVector> getAllalignments()
public double[][] getMatrix()
public double[][] getPairwiseDistance()
public int[][][] getPathway()
public IFileFragment getQuery()
public IFileFragment getRef()
public String getSeq1()
public String getSeq2()
public double mini(double a,
double b,
double c)
a - b - c - public void setKostenfunktion(double[][] kostenfunktion1)
kostenfunktion1 - public void setQuery(IFileFragment query1)
query1 - public void setRef(IFileFragment ref1)
ref1 - public void setSeq1(String seq11)
seq11 - public void setSeq2(String seq21)
seq21 - public double vergleiche(int i,
int j)
i - j - Copyright © 2007-2013. All Rights Reserved.