Uses of Class
smueller.alignment.Alignment

Packages that use Alignment

Package	Description
smueller.alignment
smueller.datastructure

Uses of Alignment in smueller.alignment

Subclasses of Alignment in smueller.alignment

Modifier and Type	Class and Description
class	AffineAlignment
class	OneAffineAlignment

Uses of Alignment in smueller.datastructure

Methods in smueller.datastructure with parameters of type Alignment

Modifier and Type	Method and Description
void	AlignmentOutput.writefile(String a, String b, Vector<OptimalAlignmentVector> all, double[][] matrix, String format, double[][] dima, String location, int alnumber, Alignment ali, int aoriglen, int boriglen, IWorkflow iw)