All Classes
AArrayFilter
AChart
ACluster
AdditionFilter
AddRandomNoise
AdminType
ADynamicTimeWarp
AElementFilter
AffineAlignment
AFragmentCommandTest
AgilentPeakReportDataSource
AlignedPairVector
Alignment
Alignment
Alignment2D
AlignmentColumn
AlignmentColumnComparator
AlignmentFactory
AlignmentFactory
AlignmentMapChart
AlignmentOutput
AlignmentPath2D
AMDISMSSimilarity
AMetabolitePredicate
AnchorExporter
AnchorImporter
AnchorPairSet
ANDIChromImporter
ANDIMSExporter
AnnotationsType
AnnotationType
APipeline
Array1DVisualizer
ArrayBhattacharryya
ArrayCorr
ArrayCos
ArrayCosLp
ArrayCov
ArrayDot
ArrayDotLp
ArrayDotMap
ArrayFactory
ArrayHamming
ArrayLp
ArrayMerge
ArrayRankCorr
ArrayStatsMap
ArrayStatsScanner
ArrayTanimoto
ArrayTools
ArrayTools
ArrayTools
ArrayTools2
ArrayWeightedCosine
AScanLineCache
AttributeType
AWorkerFactory
BatchFilter
BBHFinder
BBHFinder
BBHPeakEdgeSet
BBHTools
BeansXmlGenerator
BHeatMapChart
BidirectionalBestHit
BinaryCluster
BiPace
BiPaceBidirectionalBestHit
BiPaceResult
BottomHatFilter
BreakPoints
CachedScanLineList
CachedSpectrumList
Category
Category
CategoryPairClassificationResult
CenterFinder
CenterStarAlignment
ChromaTOFParser
ChromaTOFPeakListEntityTable
Chromatogram
Chromatogram1D
Chromatogram2D
Chromatogram2DVisualizer
ChromatogramFactory
ChromatogramVisualizer
ChromatogramWarp
ChromatogramWarp2
ClassificationPerformanceTest
ClassificationPerformanceTest
Clique
Clique
Clique
CliqueFactory
CliqueFinder
CliqueStatistics
CliqueTable
CliqueTable
ClusteringAlgorithm
ColorRampReader
ColumnWiseComparison
CombinedDomainXYChart
CompleteLinkageAlgorithm
ConstraintFactory
ContinuityArgmaxNodeBuilder
ContinuousWaveletTransform
CopyFilesOnFailure
Cosine
CosineWithMassBonus
CreateHorizontalTicVector
Creator
CSVAnchorReader
CSVReader
CSVWriter
CvLookupType
CvParamType
CwtChartFactory
CwtEicPeakFinder
CwtEicPeakFinderCallable
CwtPeakFinder
CwtRunnable
CwtTicPeakFinder
CwtTicPeakFinderCallable
Data1Dto2DConverter
Data2DNormalizer
DataFileVariablePrinter
DataProcessingType
DataProcessingType.Software
DB4oServer
DBMatch
Default2DTWVisualizer
Default2DVarLoader
DefaultBinnedMSFeatureVector
DefaultFeatureVector
DefaultPairSet
DefaultTaskResult
DefaultVarLoader
DefaultVarLoaderWorker
DeltaMasses
DenseArray
DenseArrayProducer
DenseArrayProducerWorker
DescriptionType
DigestionEnzyme
DimensionReduce
DistanceMatrix
DTW
DTW2DPeakAreaVisualizer
DTW2DTicVisualizer
DTWNew
DtwPairwiseSimilarity
DtwRecurrence
DTWTest
DtwTimePenalizedPairwiseSimilarity
EditDistance
EICHeatmapCoplot
EICPeakFinder
EIMSDBMetaboliteAssignment
ElementNotFoundException
Entity
Entity
EntityGroup
EntityGroup
EntityGroupBuilder
EntityGroupClassificationResult
EntityGroupClassificationResult
EntityGroupList
EPlotRunner
Eval
Experiment1D
Experiment2D
ExperimentFactory
ExpFilter
ExtractClassPathFiles
ExtractHelper
ExtractHelper.FType
FastBidirectionalBestHit
FastBinnedMSFeatureVector
FeatureMap
FeatureMap.DataProcessing
FeatureMap.DataProcessing.ProcessingAction
FeatureMap.DataProcessing.Software
FeatureMap.DataProcessing.UserParam
FeatureMap.FeatureList
FeatureMap.IdentificationRun
FeatureMap.IdentificationRun.ProteinIdentification
FeatureMap.IdentificationRun.ProteinIdentification.ProteinHit
FeatureMap.IdentificationRun.SearchParameters
FeatureMap.IdentificationRun.SearchParameters.FixedModification
FeatureMap.IdentificationRun.SearchParameters.VariableModification
FeatureMap.UnassignedPeptideIdentification
FeatureMap.UnassignedPeptideIdentification.PeptideHit
FeatureType
FeatureType.Convexhull
FeatureType.Convexhull.Hullpoint
FeatureType.Convexhull.Hullpoint.Hposition
FeatureType.Model
FeatureType.Model.Param
FeatureType.PeptideIdentification
FeatureType.PeptideIdentification.PeptideHit
FeatureType.Position
FeatureType.Quality
FeatureType.Subordinate
FeatureVectorDtwSimilarity
FeatureVectorFactory
FeatureVectorList
FiFoQueue
FileCopy
FilePipeline
FilterButtonActionListener
FirstDerivativeFilter
FsaTxtDataSource
GaussianDifferenceSimilarity
GCGCToGCMSConverter
GenerateTicChart
GradientPaintScale
GradientVisualizer
Group
HeatMapChart
IAggregatePredicateFactory
IAlignment
IAnchor
IArrayD2Byte
IArrayD2Double
IArraySimilarity
IBaselineEstimator
IBidirectionalBestHit
IBipacePeak
ICell
IChromatogram
IChromatogram1D
IChromatogram2D
IClique
ICliqueMemberCriterion
ICliqueUpdater
ICluster
IClusteringAlgorithm
IDBQuery
Ident2DTWVisualizer
IdentityNodeBuilder
IDtwSimilarityFunction
IDynamicTimeWarp
IExperiment
IExperiment1D
IExperiment2D
IFeatureVector
IFeatureVectorComparator
IFeatureVectorComparator
IFileFragmentModifier
IInputStreamProvider
ImagePanel
ImageTools
IMatchPredicate
IMatchPredicate
IMetabolite
ImpaxsExecution
IMutableFeatureVector
INamedPeakFeatureVector
InstrumentDescriptionType
InstrumentDescriptionType.AnalyzerList
InverseGaussianDifferenceSimilarity
IOptimizationFunction
IPairwiseFeatureVectorSequenceOperation
IPeak
IPeakExporter
IPeakFactory
IPeakFactoryImpl
IPeakFinder
IPeakGroup1DProvider
IPeakIdentification
IPeakIntegration
IPeakIntegrator
IPeakListProvider
IPeakNormalizer
IPeakPicking
IPerformanceMetrics
IPerformanceMetrics.Vars
IPipeline
IPostProcessor
IPostProcessor
IRecurrence
IRegionGrowing
IRetentionInfo
IRetentionInfo2D
IRidgeCost
IRow
IRowIndexNamedPeakFeatureVector
IScalarArraySimilarity
IScalarSimilarity
IScan
IScan1D
IScan1DProvider
IScan2D
IScan2DProvider
IScanLine
IScanProvider
ISheet
ITask
ITaskResult
ITreatmentGroup
IVisualization
IWarpInput
IWavelet
IWorkbook
IWorkerFactory
IXLSDataSource
JFreeChartTools
JFreeChartViewer
JoinScans
JXLCell
JXLRow
JXLSheet
JXLWorkbook
LineVectorRenderer
LocalHostLauncher
LocalHostMaltcmsProcess
LoessMinimaBaselineEstimator
LogDeltaEvaluation
LogFilter
MAggregatePredicate
MAggregatePredicateFactory
Maltcms
MaltcmsAnnotation
MaltcmsAnnotationFactory
MaltcmsConfigurableRunnable
MaltcmsCvProvider
MaltcmsFeatureVector
MaltcmsTaskResult
MaltcmsTools
MaltcmsWorkflow
MappedPointsType
MassFilter
MassSpectrumPlot
MassSpectrumVisualization
MassType
MatchPredicate
MaxSortPeakPicking
MeanStdDevNormalizationFilter
MeanVarProducer
MeanVarVis
MedianBaselineFilter
Metabolite
Metabolite2D
MetaboliteBrowser
MetaboliteListCellRenderer
MetaboliteListSelectionListener
MetabolitePredicate
MetaboliteQueryAction
MetaboliteQueryDB
MetaboliteQueryPanel
MetaboliteSearchPreferences
MetaboliteSimilarity
MetaboliteView
MetaboliteViewModel
MexicanHatWavelet
MexicanHatWaveletFilter
MinimumFilter
MinMaxMassFinderWorker
MinMaxNormalizationFilter
MissingPeak2D
MNumRangePredicate
ModulationExtractor
ModulationTimeEstimator
ModulationTimeEstimatorTask
MoveOutput
MovingAverageFilter
MovingMedianFilter
MSimilarityPredicate
MspaPerformanceMetrics
MSPeaklistAlignment
MSPExporter
MSPFormatMetaboliteParser
MSPFormatMetaboliteParser2
MSScanVisualizer
MStringContainsPredicate
MStringMatchPredicate
MultiMap
MultipleAlignment
MultipleAlignmentWriter
MultiplicationFilter
MyFragmentCommand
MyWorkflow
MZ5DataSource
MzData
MzData.Description
MzData.SpectrumList
MzData.SpectrumList.Spectrum
MZDataDataSource
MZIDistributionVisualizer
MziDtwWorkerFactory
MZIDynamicTimeWarp
MZIWarpInput
MZMLDataSource
MZMLExporter
MZMLExporterWorker
MZXMLDataSource
MZXMLStaxDataSource
NeighborJoinAlgorithm
NetcdfDataSource
NewDistanceMatrix
NodeBuilder
NormalizationFilter
ObiWarplmataExporter
ObjectFactory
ObjectFactory
ObjectFactory
ObjectFactory
OneAffineAlignment
OneByOneRegionGrowing
OneWayPeakAnova
OptimalAlignmentVector
PairwiseAlignment
PairwiseAlignmentMatrixVisualizer
PairwiseAlignmentVisualizer
PairwiseClassificationPerformanceTest
PairwiseDistanceCalculator
PairwiseDistanceResult
PairwiseDistances
PairwiseDistanceWorker
PairwiseFeatureSequenceSimilarity
PairwiseFeatureSimilarity
PairwisePeakListSimilarities
PairwisePerformanceMetrics
PairwisePerformanceMetrics.Vars
PairwiseSimilarityWorker
PairwiseSimilarityWorker2D
PairwiseValueMap
PairwiseValueMap.StorageType
ParamType
PartitionCalculator
PartitionedArray
PathTools
PathTools.Direction
PathWarp
Peak
Peak1D
Peak1DBidiBestHitsCriterion
Peak1DCliqueStatistics
Peak1DFactory
Peak1DFeatureVector
Peak1DFeatureVector.FEATURE
Peak1DGroup
Peak1DMSFactory
Peak1DSimilarityCalculator
Peak2D
Peak2D
Peak2D
Peak2DClique
Peak2DClique
Peak2DCliqueStatistics
Peak2DFeatureVector
Peak2DFeatureVector.FEATURE
Peak2DMSFactory
Peak2DSimilarityCalculator
PeakAnnotation
PeakArea2D
PeakAreaNormalizer
PeakAreaTableExporter
PeakCliqueAlignment
PeakComparator
PeakComparator
PeakEdge
PeakExporter
PeakFactory
PeakFactory
PeakFileFragmentComparator
PeakFileFragmentComparator
PeakFinderUtils
PeakIdentification
PeakIntegration
PeakIntegration
PeakList
PeakList1DProvider
PeakList2DProvider
PeakListBinaryType
PeakListBinaryType.Data
PeakNameFeatureVectorComparator
PeakNG
PeakNormalization
PeakPositionsResultSet
PeakRowIndexFeatureVectorComparator
PeakRTFeatureVector
PeakRTFeatureVector
PeakRTFeatureVectorComparator
PeakRTFeatureVectorComparator
PeakSeparator
PeakSimilarities
PeakSimilarityCalculator
PeakSimilarityVisualizer
PeakSimilarityVisualizer
PeakType
PerformanceMetrics
PerformanceMetrics
PerpendicularDistance
PersonType
PlotRunner
POICell
PointMapType
PointType
PointType.Dimension
POIRow
POISheet
POIWorkbook
PrecursorType
ProductSimilarity
ProfileChromatogram1D
ProgressiveTreeAlignment
PublicMemberGetters
Quad
QuadTree
QuadTreeNode
QuadTreeNodeDepthFirstVisitor
QuadTreeNodeVisitor
QualityControl
QuantileSnrPeakFinder
QueryCallable
QueryDB
QueryResultListCellRenderer
Rank
Rank.ResponseComparator
RankComparator
RankSorter
RawMSQuery
ReBuild
Reliability
ResourceType
ResourceType
Result
RetentionIndexCalculator
RetentionIndexCalculator
RetentionIndexMatcher
RetentionIndexPeakAnnotation
RetentionInfo
Ridge
RidgeCost0
RidgeCost1
RidgeCost2
RingBuffer
RTUnit
SavitzkyGolayFilter
Scan1D
Scan2D
ScanExtractor
ScanLineCache
ScanLineCacheFactory
ScanLineCacheOld
ScanlineFilterTicWarp
ScanlineHorizontalTicWarp
ScanlineMaxMSWarp
ScanlineMeanMSWarp
ScanlineTicWarp
ScoreDistributionVisualizer
SeededRegionGrowing
SimilarityTools
SimplePeakPicking
SingleLinkageAlgorithm
SoftwareType
SortedJavArrays
SourceFileType
Sparse
SparseArray
SparseScanLineCache
SparseTools
SpectrumDescType
SpectrumDescType.PrecursorList
SpectrumSettingsType
SpectrumSettingsType.AcqSpecification
SpectrumSettingsType.AcqSpecification.Acquisition
SpectrumSettingsType.SpectrumInstrument
SpectrumType
SpiderWebChart
SqrtFilter
Standardizer
StatsWriter
SteinAndScott
SupDataBinaryType
SupDataType
SupDescType
SymbolConvert
SymbolicRepresentationAlignment
TabbedPanel
TableRow
Task
TestCallable
TestConfigurableCallable
TestRunnable
ThreePredecessorsOptimization
ThreePredecessorsOptimization.State
TicAreaNormalizer
TicDtwWorkerFactory
TICDynamicTimeWarp
TICHeatmapCoplot
TICPeakFinder
TICPeakListImporter
TICWarpInput
TiledArray
TopHatFilter
TreatmentGroup1D
TreatmentGroup2D
TwoFeatureVectorOperation
UnmatchedPeaksSet
UPGMAAlgorithm
UserParam
UserParamType
UserParamType
VariableDataExporter
VariableSelectionPanel
Visualization2D
WarpMap2D
WorkbookBridge
WorkbookBridge.IMPL
Worker2DFactory
WorkerFactory
XLSIOProvider
XLSXDataSource
XmlAlignmentWriter
XYBPlot
XYChart
XYZChart
ZipResourceExtractor